Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4390 ATGAAGGAAGGTGAGAAAAGCTTAGATCCACAACTATGGCACGCTTGTGCTGGAGGAATGGTTCAAATGCCATCAGTTAACACCAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACATGCACAATCCAATGTTGATTTTGGAGATTCTTTCAGAATTCCACCACTCATACTCTGTCGTGTTGGTTCTGTGAAATTCTTAGCTGACCCTGAAACAGATGAAGTTTTTTCAAAGATAACTTTGATTCCTTTAAGAAATTCAGAGCTTGAAAATGAAGATTCTGATGGTTTTGATGGTAATATTTCTGAGAATTCAGAAAAGCCTTCATCTTTTGCTAAAACCTTAACTCAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTTCCTAGATACTGTGCAGAAACGATTTTTCCACGGCTTGATTACTCGGCTGAACCACCGGTTCAGACAGTTATCGCGAAGGATGTTCATGGCGAGGTTTGGAAGTTTAGACATATCTATAGAGGTACACCAAGGAGACACTTGTTAACAACAGGTTGGAGTAGTTTTGTGAACCAGAAAAAACTTGTTGCAGGTGATTCTATAGTGTTTCTGAGAGGTGAAAATGCTCAACTTTATGTTGGGATTCGTCGAGCGAAGAGAGGGATTGTTAATGGATTGGAAACACCTTCTGGATGGAGTTCTAGTAATGGAAGTTGTGGTCTTGGTGTTGGAGGTTTTGGTGGTGCTTTTTCTGTGTTTTTGAGAGAGGAGAATAATAAGATGTTGAGAAATGGGATTGGTGATGGGGGTGTTGGTGGTAATTTGGGAGGTGGAAGAGTGAAAGTGAGTGGTGAATCAGTGAAAGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTTAAGGCTGCTATGAGGATTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCATGTTGTTGATCCTATTTGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTAACTTGGGATGAACCAGATTTGCTACACAACGTGAAGCGAGTAAGCCCATGGTTGGTCGAGTTAGTATCGAACATGTCAGTGATTCATCTCTCACCATTCTCACCACCGAGAAAGAAACTCCGTTTTCCACAACATCCTGATTTCCCTCTCGATGTTGTTCAGTTTCCAATACCGACATTTTCGGGCAACCCTCTTAACCCTTTGTGTTGTGTATCATCTTCGGATCATTATAACGCTCCTGCCGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCACCTTAACAACAGCAATAATAAACTTCAGTTAGGTGTGTTTCCAAAGAATCCTGAGACGACGATTTCTAATGATAAGAGCAAAGAAAGTTTATCATGTTTGTTGACTATAGGAAATTCTCATAAGAGAAGTTTGGAGATAAAATCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATTCTCACTGAACAACAAATCTCTCGAAAAGTTTCTAGCGATGATGTTTTGTTGTCTCAGAATAAGGACAAAGAGAAATGGTATTTCAGTGATACTACTACTACTACTCAATCTTCAATTTCTGAACAGTTTTCACCAGCAAAATCTTCTACTACTAGTGCTAGTGCCGAGTTTTGTTGGCAACTTGGATTAGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCCTAGACTTGTCATGTGTTGGTTCTTATGAAGAACTATATAGAAAACTGGCTAAGATGTTTGGAATTGAAAGATCTGAGATGTTGAGTCGTGTACTCTACCGTGACGCAACCGGTACCGTTAAACAAACCGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGCTAGTAAAGATACTAGAAGGGTATGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGTATATTTGCTTAA 2130 0.3981 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVGSVKFLADPETDEVFSKITLIPLRNSELENEDSDGFDGNISENSEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENAQLYVGIRRAKRGIVNGLETPSGWSSSNGSCGLGVGGFGGAFSVFLREENNKMLRNGIGDGGVGGNLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPICWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFSGNPLNPLCCVSSSDHYNAPAAGIQGARHAQIGISLSDLHLNNSNNKLQLGVFPKNPETTISNDKSKESLSCLLTIGNSHKRSLEIKSDNNVKRHQFLLFGQPILTEQQISRKVSSDDVLLSQNKDKEKWYFSDTTTTTQSSISEQFSPAKSSTTSASAEFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATGTVKQTGEEPFSDFMKTAKRLTILMDSASKDTRRVCITGTRNAERGLDASNKTGPMSIFA* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4390 709 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Tpr7g4390 709 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Tpr7g4390 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr7g4390 709 Gene3D - 321 396 - -
Tpr7g4390 709 PANTHER AUXIN RESPONSE FACTOR 2 686 - -
Tpr7g4390 709 CDD B3_DNA 110 211 IPR003340 GO:0003677
Tpr7g4390 709 Gene3D - 596 681 - -
Tpr7g4390 709 SMART B3_2 111 213 IPR003340 GO:0003677
Tpr7g4390 709 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr7g4390 709 ProSiteProfiles PB1 domain profile. 597 677 IPR000270 GO:0005515
Tpr7g4390 709 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Tpr7g4390 709 Gene3D - 109 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4390 Tpr-Chr7 52664063 52668440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4390 1 679 B3 DNA Binding Superfamily AT4G30080 58.009 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr7g4390 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4390 - - mtr:MTR_2g094570 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4390 7 52664063 52668440 Tpr4g1681 4 17362216 17366598 PCT