Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4375 ATGACTTCTCACCAAAAACAACATGATCATCTTCAACTTTCTTCTTGCAAAAGAACACTTTCTCTTCCACTTCACAAGGAGAATCTTTTAATGGAAAAACCCTACAAAAAATCAGAAGAAGAATCATGTTCATCATCTTCAAAGGAATTTGTTGGAATAAAGATGCCATTAACACCAAGTCCAACAGGAAGTAACAAAAGGGTGAATTTTCTTGTGACATCACGTTCAGTTGATGCACCAATTGATAATAATAGCAATTTAGGGTTTTCAACAACAACAAAGGGAAAATCATCATCAAATAGTAGAAGTATATTACCAAAATTGAATTTTAGGTATAATAGGACAACATCAACATCATCATCAACAGCATCAGATATTGAAAAGGGTATAATTGCAAATCCAGAAAGTTCTTTTGTAGGTCCTCAAGAGAAGCCTTTAATTTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTGCCAGTTGAAGAAATTGGACGTGTTAATACAGAATTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCTTATAGAAGCCAGACGACGATAGCTCGATCTCGTTCTGAGCCTGTAGATACTCAAGAAAAAACCATAAGGAAAATGGATACGTTTTTCCGCATTATTCCTTCCACCCCAGGTGTAAAGGAAGCAAAAGAATGGTTAAAAGCATCATCAGAAAAGGATACTGAAAATGGCGGTGACGACAGTGACGGCGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCGTTGGCTCACCAAGAATGTGCTATTAAGTGGTTTAGTATCAGAGGAAACAAAACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTTTTAAGGATCCAAAATGTTCAAACTCAGAATACTGGTGCAAGATCTCAGCAGGACGATGACTTCAGGGTTTGGCAGGAGTTGCCTGTGCTTGTCATTGTCAGCATGCTTGCGTATTTCTGTTTCCTTGAGCAGCTTTTGGTAAGGGTTGGAAAAATGGGAACCAAAGCAATTTTCATTTCCCTTCCCTTTTCCTGTGTACTCGGTCTAGTCTCCGCCATGACATCAACAACCATGGTTAGGAACAGGTTCATCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTCTTTGCGCATATATTTTACCCCTTGTTTCATAACCTGCAGGTTGGTAAGCAAGCAGTTTTGGCAATCCTTCTTGCATCATTTGCAGGGTTTGGTGTAATGATGAGCGGAAGTTCAGTTTTTACGGAGTTACTCAGATGGAGAAGAAGATGGCAGGCTTACTCACAGCAGCGTCATGGCTCACAAGCGATGACACAAGAAGGACTATATTCTCAAGGTGCAATTACCCCACAATCAAGTCTTCCCAACCAAAGCCATACTACAGCACAAATGCAAAATCAACAAAACTCAAATTCATAG 1548 0.3966 MTSHQKQHDHLQLSSCKRTLSLPLHKENLLMEKPYKKSEEESCSSSSKEFVGIKMPLTPSPTGSNKRVNFLVTSRSVDAPIDNNSNLGFSTTTKGKSSSNSRSILPKLNFRYNRTTSTSSSTASDIEKGIIANPESSFVGPQEKPLISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQTTIARSRSEPVDTQEKTIRKMDTFFRIIPSTPGVKEAKEWLKASSEKDTENGGDDSDGGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARSQQDDDFRVWQELPVLVIVSMLAYFCFLEQLLVRVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFLLVVLFAHIFYPLFHNLQVGKQAVLAILLASFAGFGVMMSGSSVFTELLRWRRRWQAYSQQRHGSQAMTQEGLYSQGAITPQSSLPNQSHTTAQMQNQQNSNS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4375 515 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Tpr7g4375 515 CDD RING_CH-C4HC3_MARCH 262 310 - -
Tpr7g4375 515 PANTHER OS02G0165000 PROTEIN 21 483 - -
Tpr7g4375 515 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 483 - -
Tpr7g4375 515 SMART ringv_2 261 310 IPR011016 GO:0008270
Tpr7g4375 515 SUPERFAMILY RING/U-box 258 313 - -
Tpr7g4375 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Tpr7g4375 515 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4375 Tpr-Chr7 52539314 52544200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4375 247 316 C3H Transcription Factor Family AT2G37950 40.845 1.46e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4375 - - cam:101488558 719.539