Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4363 ATGATGTCTCAAGAAGCAGTTTCTGTTCCATCCAACTCAAACCCTAATTCAAATTCAGTTAAAAGAAAAAGAAGTCTACCAGGAAATCCAGATCCAGATTCAGAAGTGATTGCTCTATCACCAAAATCGTTGATGACAACAAACCGGTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGTTACATAGAAGAGGACACAATCTTCCATGGAAGCTTAAGCAGAGAAATCCTCTAGAAGTAATAAGGAGGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTGCACCACGAGCCTAGTAGAGCTTTAGGAGATTTAACAGGGATTAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCGAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGATTGTGGGACACTATTCTCCAGGAAGGACAGCTTCTTAACACATAGAGCCTTTTGTGAATCCTTGGTAGAAAGAAATGCAAGAATAGGTTCAATTCCATCCAACTTTGGAAACAATCTTATGATCAACACTCAACTACAGAGAATTCCTCATCAAGGTTTATTTGGGCTTAATCAAGAATTTGGTGGACCAGGCCCAGAAACATTCATGGCAACAAATTTTCCCAACAATAACAATATCCCTCATAATTTATTATTCTCATCATCAGCATCAGGAACAAACTCTGATTTAGAATTAGTCCTCACAAATAACATGAACACAACTTTTGGTTCATTGTTACCACAAGGACAATGGAATATGAATTACCGTTACAATGAACATCAAACTGCAGAAGCATCATTTATAAGTAGTGGGGGTCTATCTATGCCTATGTCTATGAATATGATGCATGCTCCTCAAGGAGTACTATTAAAGCTAGAACAACAACAAGAAGAAGACAAAATTATGCATGCTGATTTGTCTCATTTGTATACTCATAATCAATTACAAGAAGGTCCAAGTCATCACGTGTCAACAATGGAATCTACAACTACAAATGTTATGATCAATGGTAATAATAATAATAACAATAATGTTGCTGCTTTCAATAATAGTAATAATATTGTTGAAATGAAGAAATTGTTCAACCAAGGAAATGTTCTGCATGATGGAGACAAACATGAATTGAGCTTAACTAGAGATTTTCTTGGTGTTGAGTCATTGAAGTTGCCACAACAGGAGGTTCCTAGGTTTAATCCAATAGGATCTGTCATGCACATGCAAAATGATCAGTTTGGTGGACACTACTGA 1317 0.3728 MMSQEAVSVPSNSNPNSNSVKRKRSLPGNPDPDSEVIALSPKSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNPLEVIRRKVYVCPEKSCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERNARIGSIPSNFGNNLMINTQLQRIPHQGLFGLNQEFGGPGPETFMATNFPNNNNIPHNLLFSSSASGTNSDLELVLTNNMNTTFGSLLPQGQWNMNYRYNEHQTAEASFISSGGLSMPMSMNMMHAPQGVLLKLEQQQEEDKIMHADLSHLYTHNQLQEGPSHHVSTMESTTTNVMINGNNNNNNNVAAFNNSNNIVEMKKLFNQGNVLHDGDKHELSLTRDFLGVESLKLPQQEVPRFNPIGSVMHMQNDQFGGHY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4363 438 MobiDBLite consensus disorder prediction 1 24 - -
Tpr7g4363 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 409 - -
Tpr7g4363 438 Pfam Zinc-finger double-stranded RNA-binding 50 72 IPR022755 -
Tpr7g4363 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Tpr7g4363 438 SUPERFAMILY beta-beta-alpha zinc fingers 49 147 IPR036236 -
Tpr7g4363 438 MobiDBLite consensus disorder prediction 1 33 - -
Tpr7g4363 438 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Tpr7g4363 438 SMART c2h2final6 127 147 IPR013087 -
Tpr7g4363 438 SMART c2h2final6 50 72 IPR013087 -
Tpr7g4363 438 SMART c2h2final6 92 122 IPR013087 -
Tpr7g4363 438 Gene3D Classic Zinc Finger 47 149 - -
Tpr7g4363 438 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 9 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4363 Tpr-Chr7 52374198 52377178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4363 20 189 IDZ Gene Family AT3G45260 84.706 3.86e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g4363 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4363 K25870 - gmx:100815213 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4363 7 52374198 52377178 Tpr4g1720 4 17719999 17722657 PCT