Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4362 ATGGCATCTAGTGGCACCTTCCACATTAATTTTATTTTCATCGAAGAAAATTTGCCCATAAAAACCATTGATAAAGTCTCAATCAATGTGACCAATGAAACATTGTTGGTTCCTAGCAACATTTTATGCAAGTGTGATGGAAGAACAATCTTAAAAAAGGGAAACAATAACCCTTTATATGGCTACTTTTCATCCTTGCCTATTTTTCATCCAATATTGAAAGAAATTTTGCCTCATATTGGTGAATGTGCTAGGCAAATGTCTTCGTATGATTCTTGGGAGATGGATGTTATGCTTTTTGTTGGTGATGTTACTACATGGAATATTAAAGATCATAGTTATATGAATCAAGAAAATCACCAACATGCATGTTTTGCATCTAAACTTATTGTGGATTCATTGGAGAAAGTTGAAATAGATCAAGATTCTCGTTATTCTATAAAACAATGCACATTTTGTTTGGAAGAGTTCTCTAGTGGTTCGAAGATTCAATTTGTTAAGACGAAGTGCTTGCATATTTTTCACAAAGATTGCATTTTGCAGTGGCTCAAAAAATGCATTACTCAAAGATCATTCTTCTGGTGTCCATTGTGCCGGAATTGTCAAATAGTATGA 615 0.335 MASSGTFHINFIFIEENLPIKTIDKVSINVTNETLLVPSNILCKCDGRTILKKGNNNPLYGYFSSLPIFHPILKEILPHIGECARQMSSYDSWEMDVMLFVGDVTTWNIKDHSYMNQENHQHACFASKLIVDSLEKVEIDQDSRYSIKQCTFCLEEFSSGSKIQFVKTKCLHIFHKDCILQWLKKCITQRSFFWCPLCRNCQIV* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4362 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 199 - -
Tpr7g4362 204 SUPERFAMILY RING/U-box 129 201 - -
Tpr7g4362 204 ProSiteProfiles Zinc finger RING-type profile. 150 199 IPR001841 -
Tpr7g4362 204 Pfam Ring finger domain 149 199 IPR001841 -
Tpr7g4362 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 202 IPR013083 -
Tpr7g4362 204 SMART ring_2 150 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4362 Tpr-Chr7 52371315 52371929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4362 126 199 C3H Transcription Factor Family AT1G18760 37.838 2.27e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4362 - K11982 mtr:MTR_5g094680 176.407