Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4356 ATGGAAATTGATCTGAATGATGAAGTAACTGAAGTTGAGGACAAGAATAAGAACAAGAAGAATAATGTGTCTTGCAATGGTGACTGTGAGAAAAGTGTTTGTGTTTGCACTTTATCTTCTTCTTCACCAACATGTTCATCTTCTAGTTCTTCTTCAGCTCTTGTATCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGTCCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAGGGTCATTTGGAACAATTTTCATCTTTGTCTCTCTTATCACCATTGGAGATTCCAACTTTTGATCTTCAGCCACAAATCTTTTGTAGGGTTGTCAATGTTCAATTACTGGCCAATAAGGAAAATGATGAGGTTTACACACAAGTTACTTTGCTTCCACAGGCAGAGTTAGCAGGGATGTGTTTGGATGGCAAAGAGTGTGAAGGGTTGGAAGCAGATGGAAATGGAAATGGAAAAACAACACCTGCAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCTTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGCCGAGCTGCCGAAGATTGTTTTCCTCCTTTGGATTATAAGCTGGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTGCATGGTGTGGACTGGAAATTTCGCCATATTTATAGAGGTCAGCCGAGGAGGCATCTGCTCACTACCGGTTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTATTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCTGTAGCTAATGCAATATCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTCCCTTACCAAAAGTATGTTAAAAGCATCAGGAGTCCAGTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTTTAGCAGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGATGCCTTATGGTCAGATGGGATGAGGATATTGAGAATAATCAACAAGATAGAATCTCTCCTTGGGAGATTGATCCTTCTAATTCTCTCCCTCCTTTGAACATTCAATCTTCTCGAAGGCTGAAGAAACTCCGGACAGGTCTTCAAGCTGACTCCCCCAGTCACCTTATCACTGGAGACGGCGGGTTTATGGACTTTGATGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACGGTAACTAAGAAGACAGAATTTGATATCAATTCTCTAAGTCATTCTCATACTAATCTTGCATCAACTGGAGCAAGAAAAATTACTTCTGCCGAGTTTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACAAACCGGTTTCCTATGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACGGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCAGTTACACAAATTACACCTTACATCAAGCTACAAAACCAAACTTTCATTCTTTAGGATCGGAAATTCTTCAAAATTCCTATTTTCCTTATGGCCAAGGTAGTAGCATTTTGTGCTCTAAACCCACAAATTTCAACCTAGAGAATGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTATCAAGTTTCGCAATCCGAAACGAGCAGAAGCTGCAGGACAATACTTCGGCTGCTACATCTCTAGGTGCAAACATAAGGATTTTAAATGATGAAAATTTTAAGGGGAAGATAAATCCTTGCAAATTATTTGGATTTTCCTTGTCTGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGATGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTTTAAGAGATTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCATGAGTTTTGTGATATGGTATCCAAAATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAACCAGAGCTGTTTGGAACAAACACCACTGATTATGGAAGCTTCAAAGTCATCCTCAGTAGGTCAACCTGATTCTTCTCCAACAGTAGTTAGAATCTAG 2430 0.4004 MEIDLNDEVTEVEDKNKNKKNNVSCNGDCEKSVCVCTLSSSSPTCSSSSSSSALVSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFSSLSLLSPLEIPTFDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMCLDGKECEGLEADGNGNGKTTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKLERPSQELVAKDLHGVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIIGNQSCSPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIRSPVTIGTRFKMKFEMDESPERRFSSGIVIGMSDLDPYKWPKSKWRCLMVRWDEDIENNQQDRISPWEIDPSNSLPPLNIQSSRRLKKLRTGLQADSPSHLITGDGGFMDFDESIRSPKVLQGQEKTSFMSLYYGCDTVTKKTEFDINSLSHSHTNLASTGARKITSAEFTRVHPSSYAGFTETNRFPMVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYTLHQATKPNFHSLGSEILQNSYFPYGQGSSILCSKPTNFNLENVPFNTPSAQIGTLKNEVGLSSFAIRNEQKLQDNTSAATSLGANIRILNDENFKGKINPCKLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLVGRAVDLSRLSSYNDLMSELERLFGMEGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPTVVRI* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4356 809 ProSiteProfiles PB1 domain profile. 681 763 IPR000270 GO:0005515
Tpr7g4356 809 Gene3D - 170 275 IPR015300 -
Tpr7g4356 809 PANTHER AUXIN RESPONSE FACTOR 29 797 - -
Tpr7g4356 809 CDD B3_DNA 171 273 IPR003340 GO:0003677
Tpr7g4356 809 Pfam B3 DNA binding domain 173 274 IPR003340 GO:0003677
Tpr7g4356 809 SUPERFAMILY DNA-binding pseudobarrel domain 165 283 IPR015300 -
Tpr7g4356 809 SMART B3_2 173 275 IPR003340 GO:0003677
Tpr7g4356 809 Gene3D - 337 409 - -
Tpr7g4356 809 Pfam Auxin response factor 299 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr7g4356 809 SUPERFAMILY CAD & PB1 domains 684 761 - -
Tpr7g4356 809 Gene3D - 677 770 - -
Tpr7g4356 809 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 797 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr7g4356 809 Pfam AUX/IAA family 672 765 IPR033389 -
Tpr7g4356 809 ProSiteProfiles B3 DNA-binding domain profile. 173 275 IPR003340 GO:0003677
Tpr7g4356 809 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4356 Tpr-Chr7 52335326 52341443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4356 56 809 B3 DNA Binding Superfamily AT5G60450 59.138 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr7g4356 B3 8.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4356 - - gmx:100812909 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4356 7 52335326 52341443 Tpr4g1723 4 17759407 17765169 PCT