Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4355 ATGGATTTGGTTTCTAATTGCAAGGAAAAATTGGCATATTTTCGTGTAAAAGATCTTAAAGATGTGCTTACTCAGGTAGGGCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTCGATAGGATATTATCTATTCTCTCAGATGAACAAGTTGTCAAAGTGAGTGCTAAGAAGAATGCTGTTGATAAAGAACAATTGGTAAAATTAGTGGATGACACATATAGAAAACTTCAGGTATCTGGAGCCACTGATACAGCATCAAAGGGGCACGGTGCTTCAGACAGCAGTAATGTGAAAATTAAAGGTGAAGTTGCTGATTCCTTTCAATCAGATACAAAGGTTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGATCTATTGATCAAGTGTGAAGATACAAAATGCCCTGTGTCACAGCATATCAATTGCGTTATTATTCCAGATAAACCCATTGAAGATCTCCCGGCACTTCCAGATAAATTTTATTGTGAAATATGCCGTCTCAGTCGTGCAGACCCGTTTTCGGTTTCAATGACACACCCTTTATTTCCGGTGAAGTTGATTACAACCCATATTCCAACTGACGGAACCAACCCTGTGCAGACTATTGAGAAAACATTTCAACTTACAAGAGCAACCAAGGATTTGTTATTAAAACAAGACTTTGAAATTCAGGTTTGGTGCATGCTTCTGAACGACAAAGTTCCATTCAGGATGCAATGGCCACAATATGCAGACCTACTGGTCAATGGTTATTCTGTTCGTGCAATTAATAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGCCCAATTATCACGCCATATACAAAAGAAGGAGTTAACAAGATTTGTTTGACGGGGTGCGACACTCGCATTTTCTGTTTAGGGGTCCGCATTATTAGAAGGCGCACCGTGCAACAGGTCCTCAACTTGATTCCCAAGGAGTCTGATGGTGAGCGTTTTGAAACTGCTCTTGCACGTGTCTGTTGTCGTGTTGGGGGTGGAAATTCAGCTAATGATGCTGATAGTGACAGTGATCTGGAGGTGGTTTCAGATACTTTTAGCATCAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGTTCAAGAAAGTGGCAATGCCCCATATGTCTCAAAAACTATGCATTGGAGAATATCATTATTGATCCGTATTTCAATCGCATCACTTCTATGATGAAAAACTGTGGGGATGAGTTTACAGAGGTGGAGGTGAAGCCTGATGGTTATTGGCGTGTCAAAGCTAAGAATGAAAGTGAACGCCGCGAGTTAGGGAATCTTGCTAAATGGCACTCCCCCGACGGGTCCCTCTCTGTTTCTACTAGTGGAGAAGACAAGAAAGCGGAAACCTTGAATGTCAAACAGGAAGGTGTTTCAGACAGTCCTAATGGCTTAAGACTTGGCATTAGGAAAAATCGTAATGGAGTTTGGGAAGTAAGCAAACCCATTGAAACAAACACCTCTTCTGATAATAGGTTGAATGCAAATTTAGGAAATCATGAACTTGTGGTTATTCAAATGAGCAGCAGTGGCACTGGAAGCGGATTGGATGGTGATGATCCAAGCGTAAATCAGAGTGGTGGTGGGCATATAGATTATTCTGCTACCAATGGGATTGAGACGGATTCTGTGCGTCACACTAATGTTAATTCAACTTATGGATATACTATTCCTAACACTTCTGCTCCAATGGCTGATGCAGATATTATTGTTCTTAGTGATTCTGAAGATGATGATATATTAGTATCTGCTACAGATGGTTGCAACAATAATCAAACTGGTGATGCAGTTGATGTTTACTCAGTGCCTCCACCTGGAATTACCGATCCATATGCTGGAGATCCCAATATTGATGGAAATTCATGCTTGGGAGTTTATGATAATCCCGGTGTTTGTTTTGGGGTCCCCTCTCTCTGGCCATTGCATTCTGGAACTCAGGCAAGCTCAGGATTCCAACTATTCAGTTCTGATGTGGATGTGTCTGATGCATTGGTTCATGGTGATATTAATTGCTCCTCATCACTGAATAGTTATACATTGGCTCCAGACGCTGCTCTGGGATCTAATACTCTAATACCCAATTCATCCACTGATCAGTCTGACACTGATTTAAATGGTGGCTTGGTTGACAATCCATTGGCATTTGGTGGAAACGATCCCTCGCTTCAGATTTTTCTTCCTACAAGACCAGCAGAATCATCTATGCAGCCTGAATTAAGAGACCGCACAGATGTGTCGAATGGCGTCTGTACAGAGGATTGGATCTCTCTTAGCCTCGGAGGTGGGGCTGGTGGCAGTAATGGTGATGCTTCCACGCCAAATGGTTTGAATTCCGAACCGCAAATTCCATCCAGAAAAGATGCCACACATTCTTTAACTGAAACCGCTTCTTTGCTTCTTGGTATGAATGATGCTGGTTCTGACAAAGCAAGTAAGAAAAGATCAGAAGGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCAGCGCTTGCATCTTTCTATTGGTTCAGATTCTGAGTAG 2628 0.4209 MDLVSNCKEKLAYFRVKDLKDVLTQVGLSKQGKKQDLVDRILSILSDEQVVKVSAKKNAVDKEQLVKLVDDTYRKLQVSGATDTASKGHGASDSSNVKIKGEVADSFQSDTKVRCLCGSSLETDLLIKCEDTKCPVSQHINCVIIPDKPIEDLPALPDKFYCEICRLSRADPFSVSMTHPLFPVKLITTHIPTDGTNPVQTIEKTFQLTRATKDLLLKQDFEIQVWCMLLNDKVPFRMQWPQYADLLVNGYSVRAINRPGSQLLGANGRDDGPIITPYTKEGVNKICLTGCDTRIFCLGVRIIRRRTVQQVLNLIPKESDGERFETALARVCCRVGGGNSANDADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMKNCGDEFTEVEVKPDGYWRVKAKNESERRELGNLAKWHSPDGSLSVSTSGEDKKAETLNVKQEGVSDSPNGLRLGIRKNRNGVWEVSKPIETNTSSDNRLNANLGNHELVVIQMSSSGTGSGLDGDDPSVNQSGGGHIDYSATNGIETDSVRHTNVNSTYGYTIPNTSAPMADADIIVLSDSEDDDILVSATDGCNNNQTGDAVDVYSVPPPGITDPYAGDPNIDGNSCLGVYDNPGVCFGVPSLWPLHSGTQASSGFQLFSSDVDVSDALVHGDINCSSSLNSYTLAPDAALGSNTLIPNSSTDQSDTDLNGGLVDNPLAFGGNDPSLQIFLPTRPAESSMQPELRDRTDVSNGVCTEDWISLSLGGGAGGSNGDASTPNGLNSEPQIPSRKDATHSLTETASLLLGMNDAGSDKASKKRSEGPFSFPRQKRSVRQRLHLSIGSDSE* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4355 875 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Tpr7g4355 875 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Tpr7g4355 875 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 809 - -
Tpr7g4355 875 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 809 - -
Tpr7g4355 875 MobiDBLite consensus disorder prediction 799 834 - -
Tpr7g4355 875 MobiDBLite consensus disorder prediction 797 875 - -
Tpr7g4355 875 SMART sap_9 11 45 IPR003034 -
Tpr7g4355 875 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Tpr7g4355 875 Pfam SAP domain 14 42 IPR003034 -
Tpr7g4355 875 Gene3D SAP domain 1 63 IPR036361 -
Tpr7g4355 875 CDD SP-RING_Siz_plant 360 408 - -
Tpr7g4355 875 SUPERFAMILY SAP domain 1 63 IPR036361 -
Tpr7g4355 875 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Tpr7g4355 875 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Tpr7g4355 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Tpr7g4355 875 SMART PHD_3 114 166 IPR001965 -
Tpr7g4355 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Tpr7g4355 875 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4355 Tpr-Chr7 52322797 52333507 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4355 - - aprc:113857557 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4355 7 52322797 52333507 Tpr4g1727 4 17783658 17795798 PCT