Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4343 ATGTTAGATCTTAATCTCGATTCAACTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCATCAATCGTGAATGCGGAGGGGTCAAGTAACGTTACCGGAGATGAAGACTCGTGTTCAACACGCGCCGGTGATGGTTTTACTTTTAACTTCGGTATATTGAAGGTTGAAGGAGGAAACGAAGTTGTTGCAACGAAGGAGTTGTTTCCGGTGAGTTCGGGGAATTGGTCGGGGGAGTGTTCGACGATGATGATTCCGGCGAAGAAGAGTATGATGGATCTCTCGATGGATCATAACCGTGGAGTTCAAAATGGAGTTGTTCAGGTTCAAGTTCAACAACGACCTCAGGTGAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTTCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGAAAACGAGCTGAAACCAGTAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGAACCTAAAGAAAACAGAGGGTATCGTCAATTTCAGGCAGTCCCTTGCAACCTGCATCCTGGAAGGAATTTAAAGATGGAGACCAATGTGAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGCAGGAAAGAGCAGAGAGAATTGGCATTGACCCTTTAAAAGGACTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCTCTCCATCCATGGCACCTGGTACCAATGCATCTCCATACTATTACCAGGTGAAGTCCTCTCAGGCACCACCACCATAG 1437 0.4398 MLDLNLDSTQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDGFTFNFGILKVEGGNEVVATKELFPVSSGNWSGECSTMMIPAKKSMMDLSMDHNRGVQNGVVQVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFEPSTYENELKPVAINEGGSHNLDLNLGMATPGHEPKENRGYRQFQAVPCNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEQERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFSPSMAPGTNASPYYYQVKSSQAPPP* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4343 478 SMART rav1_2 232 295 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 SMART rav1_2 140 202 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 MobiDBLite consensus disorder prediction 121 140 - -
Tpr7g4343 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 459 - -
Tpr7g4343 478 CDD AP2 231 291 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 ProSiteProfiles AP2/ERF domain profile. 232 289 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 SUPERFAMILY DNA-binding domain 139 196 IPR016177 GO:0003677
Tpr7g4343 478 CDD AP2 140 195 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 Gene3D AP2/ERF domain 139 198 IPR036955 GO:0003700|GO:0006355
Tpr7g4343 478 Gene3D AP2/ERF domain 231 290 IPR036955 GO:0003700|GO:0006355
Tpr7g4343 478 Pfam AP2 domain 140 188 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 Pfam AP2 domain 231 281 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 PRINTS Ethylene responsive element binding protein signature 271 291 IPR001471 GO:0003700|GO:0006355
Tpr7g4343 478 SUPERFAMILY DNA-binding domain 231 290 IPR016177 GO:0003677
Tpr7g4343 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 459 - -
Tpr7g4343 478 ProSiteProfiles AP2/ERF domain profile. 140 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4343 Tpr-Chr7 52180776 52185331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4343 70 347 AP2-EREBP Transcription Factor Family AT4G36920 59.649 4.62e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr7g4343 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4343 K09284 - gmx:100777102 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4343 7 52180776 52185331 Tpr4g1759 4 18181485 18185624 PCT