Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4315 ATGGAAATGGATGATTTTTCTTCAACTAGAATCAATGATAGTTGTTTCCAAGGTGTAATGGGAAATGGGTATGGTTTATCTTCTTCTTCTTCTTCTCTTGTTTTGGATAGAGAAAGAGGAGAACTTGTTGAAGCTGCTGTGAAAATGGAACGAAAGGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCTGAGAGGAGAAGAAGAGCAAGAATTAATTCACATCTTGATACTCTTCGTAGTGTTATTCCAGGTGCTAATAAGTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGATTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGCTTAAATGGTTTTCCTTATTCAATTGTGGCATCGCTATGTTGTGATTACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGCACTTCAGCTTATGATAATAAGGGCTGAGATTGCAACTTTAGAAGGTAGAATGAAGAATGTGTTTGTCATAATTAGCTGCAAAGAACAGAAGTTCGAAGATGCTGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGGTGTTTTAGAAACTAGAAAGAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 753 0.3599 MEMDDFSSTRINDSCFQGVMGNGYGLSSSSSSLVLDRERGELVEAAVKMERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIVASLCCDYKPGLLSDIRQALDALQLMIIRAEIATLEGRMKNVFVIISCKEQKFEDAEYRQFLAGSVHQALRSVLDRFSVSQGVLETRKRRRISIFSSSSLGDFL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4315 250 Pfam Helix-loop-helix DNA-binding domain 65 110 IPR011598 GO:0046983
Tpr7g4315 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 119 IPR036638 GO:0046983
Tpr7g4315 250 Gene3D - 57 119 IPR036638 GO:0046983
Tpr7g4315 250 PANTHER TRANSCRIPTION FACTOR BHLH30 1 250 IPR045847 GO:0003700|GO:0006355
Tpr7g4315 250 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 250 - -
Tpr7g4315 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Tpr7g4315 250 SMART finulus 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4315 Tpr-Chr7 51927874 51931218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4315 48 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 2.19e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4315 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4315 - - lja:Lj3g3v2848980.1 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4315 7 51927874 51931218 Tpr7g4315 7 51927874 51931218 ECH