Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4272 ATGACTACTATTTGTGCTGAGCAACAACAACACAAGTTTCATTCTTCTTACCAACCCCTCTCCCCCAAAAAATCCTTAAGAGAAATTGATATCCCACCAAGAAAACTCCTCACCCGCCGTAGCACCACCGCTGCCGACATGTTTTCCGACGACACCATCCTTCAAAAGTTCCTTCCACATAATGATTCTGACTCTGATTCGGACGATCCTTACTCGTCCGATCATTTTCGTATGTACGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGTCACGACTGGACAGACTGTCCATTCGCACACCCTGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGAACTGTTTGTCCTGAGTATCGCCGCGGTAGCTGTAACCGCGGTGATTCTTGTGAATTTGCTCATGGAGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACAGAAGCTTGCAAAGATGGTAAAAATTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCGGTAACTTCTTCATCTTCTTCAAATGAACATTTTTCATGCAATAAGAAAAATAATAAGATTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGCTGTTTGTATTGTCATTGTGGTGGTAATGGTGCTATTGACTCTCCAACTTCAACACTTTTTGGTTTGTCTCATTTTTCTTCGCCGCCGGTGTCACCTCCTATGTCTCCGATGAAGCCAAGAAATGGTGTTTCATCTCTCTCACGCTACGGTTCTTCGATTAATAGTAACAATCTTCGTTACAGAGACATGCTTATTGAACTTTTGGGTTCATTTGATGGTTTAAATTTCAATGAAGGTTCATCTTCTTCTTCTTCTTCCCCTGTTTCTGGTGCTAAAGCACTTCAGAATCAGATACAGAACAATATGAACATGGGTTATCTTGATATTCCTCTTAACTCTGAGGAACATATTCAGAATCAGAATCAGTTTATTGTTTCACCTTCTTCTTTTGATAATCAACAGCAACATTTCAATATTCTTTCACCAATTCATCAGAATTTGACAGTACCAAGTTTCAATGATATTGATGACAGTAACATGATGATTAATAACAAAATGATGTTTTTGGGAAATAATGAGAATAATAAGGTTGTTGTTGGTGGTGGTGATGCTCCTGATCTTGGATGGGTTAATGAGCTTCTGATGTAG 1224 0.4011 MTTICAEQQQHKFHSSYQPLSPKKSLREIDIPPRKLLTRRSTTAADMFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGSCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNEHFSCNKKNNKILNNHVASKSNNCCLYCHCGGNGAIDSPTSTLFGLSHFSSPPVSPPMSPMKPRNGVSSLSRYGSSINSNNLRYRDMLIELLGSFDGLNFNEGSSSSSSSPVSGAKALQNQIQNNMNMGYLDIPLNSEEHIQNQNQFIVSPSSFDNQQQHFNILSPIHQNLTVPSFNDIDDSNMMINNKMMFLGNNENNKVVVGGGDAPDLGWVNELLM* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4272 407 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Tpr7g4272 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 140 IPR000571 GO:0046872
Tpr7g4272 407 Gene3D - 115 178 - -
Tpr7g4272 407 PANTHER UNKEMPT FAMILY MEMBER 28 406 IPR045234 -
Tpr7g4272 407 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 406 - -
Tpr7g4272 407 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Tpr7g4272 407 SMART c3hfinal6 150 173 IPR000571 GO:0046872
Tpr7g4272 407 SUPERFAMILY CCCH zinc finger 114 144 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4272 Tpr-Chr7 51631088 51632672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4272 68 177 C2H2 Transcription Factor Family AT5G07500 69.091 6.20e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g4272 zf-CCCH 4.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4272 K23047 - gmx:100801371 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4272 7 51631088 51632672 Tpr7g4272 7 51631088 51632672 ECH