Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4270 ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTTCATGGACGATGAAGAAACTTCACAGCTTGTTCACCATTCTCGCCATGTCAAACATCAACAGAACAACCGCGACCCACTCTTCATCGACCAACAACAACAACAGCACCAAGTCGAAGAAGATGAAGAAGAAGAAGAAGATGATGATGATGATGATCAGCAAGAGCACGATGAGGAAGAAGATGAGCAAGGAGAAGAAGAGGAAGATGAAGAAGAGGCTGAAGATGATGATGGTGGTGATGAAGATGAGCAGCACAATAACGATGACAAAGAAAAATCACAGGATTCCGATGAAGACCCATCTTCTGATGATGAAGAAAAGCCTGAATATGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTCGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGGCTGGGGAACAATGAATGTCCTGCTTGCCGCACACACTGCGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAACGGCAATCTGAAGCACTAGGCAAGAAACGTAAAGATACACCAGGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAATCAAACGACTGATGTTCAAGGATCTGAAAATGACGAAAATGGCAATAATGACAGAGACTCGTCTTCTGGCGATGAGCGCGGCACAGAACACCGACAGAGAAAACGAAAGAGATGGACCAGGGTTCGCCCCTCTCAGCCCTCATCATCACTGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACGGATATAAATAGAGAAAATCGAGGAACTTCAAGGCAGGTGACAAAACCTAGAAAGCTTACTTGGGGTAGGGGTGGTTTTCGGAGCAACACGAGATATGGAAGTGGTGGTGGTAGTAACAGCAAAAATTCCCGCAGTGGTCGAATGTCTAAGTTGGTTGACCATCTCAAAAACTTGGATGAAAACACTGCTGAGTTTGAAGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACTACACCAAGTTTGGAGAAGCTTCACCTGAGTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAGACACCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCGGTGTAAATTGTGACAAGTCAACTGATGAGAATTCACTCCCGGATTGTGATGAGCTAACATCACTGGTTATAGATCCACAAAAAGATGAACTAGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG 1539 0.4308 MPAQKRSLPEFMDDEETSQLVHHSRHVKHQQNNRDPLFIDQQQQQHQVEEDEEEEEDDDDDDQQEHDEEEDEQGEEEEDEEEAEDDDGGDEDEQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDTPGSSSFVTRSQRNQRNLQSRRQNQTTDVQGSENDENGNNDRDSSSGDERGTEHRQRKRKRWTRVRPSQPSSSLASPDGGSVESDTDINRENRGTSRQVTKPRKLTWGRGGFRSNTRYGSGGGSNSKNSRSGRMSKLVDHLKNLDENTAEFEVHLMFISPDKETTPSLEKLHLSCRPTLSVKNLYEYVASQTPLKAEEVEILAVKGCSGVNCDKSTDENSLPDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4270 512 MobiDBLite consensus disorder prediction 326 340 - -
Tpr7g4270 512 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Tpr7g4270 512 PANTHER OS11G0578200 PROTEIN 1 511 IPR044592 -
Tpr7g4270 512 Pfam Zinc finger, C3HC4 type (RING finger) 133 173 - -
Tpr7g4270 512 SMART ring_2 134 173 IPR001841 -
Tpr7g4270 512 CDD RING-HC_RING1_like 134 174 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 359 374 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 244 276 - -
Tpr7g4270 512 Coils Coil 200 223 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 277 297 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 308 325 - -
Tpr7g4270 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 8 23 - -
Tpr7g4270 512 SUPERFAMILY RING/U-box 121 188 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 233 376 - -
Tpr7g4270 512 Coils Coil 39 59 - -
Tpr7g4270 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 511 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 1 117 - -
Tpr7g4270 512 ProSiteProfiles Zinc finger RING-type profile. 134 174 IPR001841 -
Tpr7g4270 512 Coils Coil 66 86 - -
Tpr7g4270 512 MobiDBLite consensus disorder prediction 47 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4270 Tpr-Chr7 51618974 51626436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4270 132 257 C3H Transcription Factor Family AT2G30580 28.058 8.66e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4270 K10695 - gmx:100776547 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4270 7 51618974 51626436 Tpr7g4270 7 51618974 51626436 ECH