Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4269 ATGGTTGACTTTCAAAGATTGGAACTTTTGCTGTTTCAGAGGAGAATGTGGCATGAAAATTTGTTCCATGTTGTATTTGGTTGTTGGGTTGTTCTGTTTTTACTTTGTCCTGTGTCTGGTCTCAGACCCTTAAGGGATGATCAGTTTCAATTAACAAGAAAGGACGAAAGTTTCGTAGGTCCATTTTCAGAATGGAACATAACAGGAACATACAAAGGGACTTGGAAATTTTTAGATACCGCAAATGGCTCCTCAAGATTTCCAGACACCGGAAGAACAAATGGCAATTCCATAATCACATTAAGTAGTACACGTACGACGATAACTGGAGTACATTATGTCCATGGAATAGTTATATTCGATGATTTGTTTGACAACGAGCATGATGATGGTGGTGCTCAAATCAGCTTCGAAGGTGTATACATATGGCCTTTTAAACAGCTCAGAATGGTAACAAACAGTGGAAAAGAAGGAGAGTTGAATCAGTATGAAGATTATATTTTACCGAATCCATATCGTCTTCTTGCAGCTTTCTCATCTCAGACACTGCAAGGTTCGTCGCGAGATAAGATGTGGAGAAGAAAACATTCTATGATGCATGAATTGGAGAAACATTGTAATGCCGAAATTTCTGCGACGGTTTCACACTTGCCATCATCAAAATATGAAGGCGAGCAAGACCATTTTTCTCTCGAAGGGTTAATGAAGAGTCCTCCGGTGGATGATGGCACGGACTGCTTGTCACCGTTACTATTAAATGCGACTTCTGTTATAAGAATTGATGTCGACTATAACAAAGCAGTCTACTATACTTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTGTTGAATCGTCAAATCATGCATAGCGGCACTCAATCTGGAGCTGCTAAGGTGTCGATACTAATGATTGGTCAACAGGCGTTAATGGATGCCCATTTTACCCTTTTACATCTGACTATAGGAATGATAGTTGAATCCTTGTTAATTGCTTTTGCAACGGTTGCATTTTTCAAGTTTGTGCTCTTCTCAATATTTGAGACGAGATATCTCATTGCCATTTGGAAGGCAGGTAGTAGGTCTTTGATTAACGCAGAAGGTTACGAGGCTCCGAGGCATGAAATGTGGCGTGAGCTTTCACTGTTACACAGTTGTTTATATGGGACACTGTTAATGGCAGGCATTATAAGCATGTATGAGTTACATAATCATATGAAACTGATTCTTCTTCTTATGTATACCTTTTGGATACCTCAGATAATCCGCAATGTTATTCATGATTCACGCAAACCTTTGGATCCTCATTATATATTAGGAATAACTGTTACTCGGCTCGCAATCCCATTATATATATTTGGTTTCCCGAACAACTTCATGCACATCGAACCAGACAAGAACTGGTGTGTTTGTTTGACATTGTTTCTTGGGCTTCAAGCTGTGTTTCTTCTCCTTCAACACTATCTTGGACCGCGTTGGTTCATTCCTCGTCAGATGCTACCTGAGAAATACAACTATCATAGGAAGTTTGATCATACTAAAAGACATGCTACAGAATGTGTTATTTGCATGACAGACATTGATCTTTTTCGCAGAACTAGTGATTGCATGGTGACACCTTGTGATCATTTCTTCCATTCTGGTTGCTTGCAAATATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGTCGCGCTTTACCATCTGCTTAG 1716 0.3951 MVDFQRLELLLFQRRMWHENLFHVVFGCWVVLFLLCPVSGLRPLRDDQFQLTRKDESFVGPFSEWNITGTYKGTWKFLDTANGSSRFPDTGRTNGNSIITLSSTRTTITGVHYVHGIVIFDDLFDNEHDDGGAQISFEGVYIWPFKQLRMVTNSGKEGELNQYEDYILPNPYRLLAAFSSQTLQGSSRDKMWRRKHSMMHELEKHCNAEISATVSHLPSSKYEGEQDHFSLEGLMKSPPVDDGTDCLSPLLLNATSVIRIDVDYNKAVYYTLMVTFVSFLQVLLLNRQIMHSGTQSGAAKVSILMIGQQALMDAHFTLLHLTIGMIVESLLIAFATVAFFKFVLFSIFETRYLIAIWKAGSRSLINAEGYEAPRHEMWRELSLLHSCLYGTLLMAGIISMYELHNHMKLILLLMYTFWIPQIIRNVIHDSRKPLDPHYILGITVTRLAIPLYIFGFPNNFMHIEPDKNWCVCLTLFLGLQAVFLLLQHYLGPRWFIPRQMLPEKYNYHRKFDHTKRHATECVICMTDIDLFRRTSDCMVTPCDHFFHSGCLQIWMDIKMECPTCRRALPSA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4269 571 SUPERFAMILY RING/U-box 502 569 - -
Tpr7g4269 571 Pfam Ring finger domain 520 565 IPR001841 -
Tpr7g4269 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 570 IPR013083 -
Tpr7g4269 571 PANTHER RING ZINC FINGER PROTEIN 7 570 - -
Tpr7g4269 571 ProSiteProfiles Zinc finger RING-type profile. 521 565 IPR001841 -
Tpr7g4269 571 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 7 570 - -
Tpr7g4269 571 SMART ring_2 521 564 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4269 Tpr-Chr7 51609683 51615165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4269 508 571 C3H Transcription Factor Family AT1G53010 30.769 1.21e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4269 K23788 - gmx:100780140 816.224