Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4261 ATGGATCATGGTCAACAAGTATGTCAACCTTCCTCTTCTTCAACCAAAGTGGAAAGAAAGATTGTTGAGAAAATTAGGAGAAATCATATGAAGAATCTCTTTTCCAAACTCAACTCTCTTCTCCCTAAATATAATCACAAGGAAACGTTGCCATTACCTGATCAAGTAGACGAGGCTATAAACTACATAAAGATCCTAGAGACAAATGTAAAGTTGGTGAAGGAAAAGAAAGAAGGTTTAATGGAAAACAAGAGATCACATAGTGACTGCTCGAGTTCTTCTGAAGCAAAAAGAAACATAAAATCGCCCAAAATTGAGATTCATGAAATGGGTTCCTCTCTACAAATCATTATAACATGTGGGGTTGATGATCAATTCATTTTCTGTGAAATTATTCGAATACTGCATGAAGAGAATTTGGTGGTCATCACTGCAAATTCTTCGGTGGCCGGAGACTCAATTTTTCATATTGTGAACGCTGAGATTCCGCAATCTTTGCTTCAATTTGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAACGGATCAGGGAGTGGTATAGAAACAGAGCCTCAATTGTGGGATTTTGAAATTGGAACTCGGAGTTGGGAGCTTCTAGATTCTATAGTAACCAAGAGTTTATCAAATCCTTGA 660 0.3727 MDHGQQVCQPSSSSTKVERKIVEKIRRNHMKNLFSKLNSLLPKYNHKETLPLPDQVDEAINYIKILETNVKLVKEKKEGLMENKRSHSDCSSSSEAKRNIKSPKIEIHEMGSSLQIIITCGVDDQFIFCEIIRILHEENLVVITANSSVAGDSIFHIVNAEIPQSLLQFGATKVSERLKRFVNGSGSGIETEPQLWDFEIGTRSWELLDSIVTKSLSNP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4261 219 Coils Coil 63 83 - -
Tpr7g4261 219 Gene3D - 6 98 IPR036638 GO:0046983
Tpr7g4261 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 85 IPR036638 GO:0046983
Tpr7g4261 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 189 - -
Tpr7g4261 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 189 IPR015660 GO:0003700|GO:0006357
Tpr7g4261 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Tpr7g4261 219 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4261 Tpr-Chr7 51555700 51557387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4261 9 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.799 8.42e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4261 HLH 9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4261 - - mtr:MTR_2g090425 271.552