Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4249 ATGGCCTTCAATCAGTATTTTGAGGAGGGTGTGGACCGAATTGAGTCCTTGGAAGATAAACCATCTCAGGAAATATGGAAATGTGCGAGTGCTGAAGCAATTTCAGGCTCTAGCGGCTTTGACTGCAACATATGTCTTGAGTGTGTGCAAGATCCGGTTGTCACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCAATGACGAAAATGAAGATAAGCGAAAGGAGAAGCCACAATGTCCAGTATGCAAATCAGAAATTTCAAAGTCATCTCTTGTTCCGCTCTATGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGCTCAACAAGTAAGGAGTGTGATACCACCGAGACCGCTTCGTCCATTACCAAGATCACTTGATGCTGCATCTGTTTCACAACATACTTCTCAGGTTTATCATCCTCATTATCTTAACCATACTCAACGATACACTTCACCAATGCTTAACACAAGTGGTTTAATGACCAATCCATTGGATACAACTTATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGTAACCAAGTGACAAACATATATACATACCCAAATTCGTATAATCTTACAGGAATTAGTAATCCAAGGATGAGAAGGCATTTGATGCGAGCAGATAGGTCGCTCGGTAGAATCTGTTTCTTCCTCTTTTGTTGCACAGTTTTGTGTCTTCTCTTATTTTGA 729 0.4184 MAFNQYFEEGVDRIESLEDKPSQEIWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFNDENEDKRKEKPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNAQQVRSVIPPRPLRPLPRSLDAASVSQHTSQVYHPHYLNHTQRYTSPMLNTSGLMTNPLDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGISNPRMRRHLMRADRSLGRICFFLFCCTVLCLLLF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4249 242 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Tpr7g4249 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 242 - -
Tpr7g4249 242 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Tpr7g4249 242 SUPERFAMILY RING/U-box 38 102 - -
Tpr7g4249 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 242 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr7g4249 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 106 IPR013083 -
Tpr7g4249 242 SMART ring_2 42 89 IPR001841 -
Tpr7g4249 242 CDD RING-HC_AtRMA_like 40 91 - -
Tpr7g4249 242 Pfam Zinc finger, C3HC4 type (RING finger) 42 89 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4249 Tpr-Chr7 51424900 51427487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4249 24 242 C3H Transcription Factor Family AT4G28270 39.381 6.67e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4249 K10666 - gmx:100785491 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4249 7 51424900 51427487 Tpr7g4249 7 51424900 51427487 ECH