Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4246 ATGAAGCACCACCGTGTCTCCGCCTTGTTTTTTTCAAGCCTCTGCAGCTTTATACTTGTGCAGGGACTGAGTCAGCATAGTGTCCACCTTGATACACATTGGTACCCTGGAACTGCTACTTGGTATGGTGAAGCTGAAGGAGACGGTAGCACAGGAGGGGCGTGTGGGTATGGTAGTTTGGTGGATGTGAAGCCGTTAAAGGCAAGAGTAGGGGCAGTGGGGCCAGTGTTGTATAAGAAGGGAGAAGGGTGTGGGGAGTGTTATAAGGTGAAGTGTTTGGACCATAGCATATGCTCGAAGCGGGCAGTGACAGTTATAATAACGGACGAATGTCCTGGCTGCCCGTCTGATAGAACACACTTCGACCTTAGTGGTGCTGCTTTTGGTCACATGGCTGTTAAAGGCGTGAATGGTCAACTTAGAAATAAAGGTGAAATCCCAATTGTTTACCGAAGAACAACATGTGTATACACTGGCAAAAATATTGCTTTCCAAGTTAATGAAGGCTCCACACCATATTGGTTGTCACTTTTAGTTGAGTTTGAAGATGGAGATGGTGACATAGGCTCCATGCACATACAAGAAGCTGGGTCAAGTGAGTGGCTACAAATGAATCATCTATGGGGTGCAAATTGGTGTATTATTGCAGGACCTTTGAAAGGACCTTTTTCTGTTAGACTAAGTACATCCACTGGGAGAGGGCTTACTGCTAAAGATGTTATTCCATCTAATTGGTCTCCAAAATCAACTTATACTTCTCGCTTAAATTTCTCTCCTTAA 780 0.4474 MKHHRVSALFFSSLCSFILVQGLSQHSVHLDTHWYPGTATWYGEAEGDGSTGGACGYGSLVDVKPLKARVGAVGPVLYKKGEGCGECYKVKCLDHSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVKGVNGQLRNKGEIPIVYRRTTCVYTGKNIAFQVNEGSTPYWLSLLVEFEDGDGDIGSMHIQEAGSSEWLQMNHLWGANWCIIAGPLKGPFSVRLSTSTGRGLTAKDVIPSNWSPKSTYTSRLNFSP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4246 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Tpr7g4246 259 SUPERFAMILY Barwin-like endoglucanases 29 159 IPR036908 -
Tpr7g4246 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Tpr7g4246 259 Pfam Lytic transglycolase 75 150 IPR009009 -
Tpr7g4246 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 160 IPR007112 -
Tpr7g4246 259 PANTHER EXPANSIN-LIKE PROTEIN B1 28 259 - -
Tpr7g4246 259 Gene3D - 157 258 IPR036749 -
Tpr7g4246 259 PANTHER EXPANSIN-B3 28 259 - -
Tpr7g4246 259 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Tpr7g4246 259 Gene3D - 19 155 IPR036908 -
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 209 226 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Tpr7g4246 259 SMART dpbb_1 70 150 IPR007112 -
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Tpr7g4246 259 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4246 Tpr-Chr7 51401178 51404479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4246 32 195 Expansin Gene Family AT2G20750 72.455 2.99e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4246 K20628 - gmx:100780112 454.136