Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4197 ATGGGAAGATCACCTTGTTGTGATAATAAAAATGGACTCAAAAAAGGTCCATGGACAAATGAAGAAGATAATATGCTTATCAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCCAAAAATGCAGGTCTTCAAAGATGTGGCAAGAGTTGTCGGCTTCGATGGACGAATTACTTGAGACCTGATATCAAGAGAGGAAGATTTTCCTTTGAAGAAGAAGAGACTATCATTCAGCTCCATAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCTGCTAGATTACCGGGAAGAACAGACAATGAAATAAAAAATTACTGGAACACCCACATAAGGAAGAGATTGCTTCGGAATGGAATTGACCCCGTTACTCATACTCCACGTCTCGATCATCTATTTGACATATCCTCCATTAATATTCTAAGGTCAGCTTTATTAGGAGGAACCAATCCATCATTTCTGAGCCTATTAGGTGGTGCTCAAGCTTTGATGAATCCAGAATTGTTAAAGCTAGCTGCAACTGCCACACTATTAAACAACAACAACAACAACATGAATTTGGTTTCACAAAATCCACAACAAATTAATAATGTTGCTAATTGTACTCAACAACTAGTGCAAAGTCAAGTTTACCCTCAAGATCAATTTCAAATACCAACTCAAATCCACAATGTGAATAATGGCTTATTAGGAAACATGAGTTGTTCAAGTTCAGCTGAAAATTCAAATGGTTATTTTGGAGAAGATTTGATATCTAAACAATATTCAGAATTGTTTCATTGTCTTAACGATGTAAACAAAAATAATACGGGGTATGAATCGGTTATATCGTCCACACCTTTATCCACAACACCAACGCCAACACCATTGAATTCACCATCAACATATGTGAATAGCAACACAGAGGAAGAAAGGGACACATATTGCAGTGACATATTCAAATTTGAGATTCCAGAGGGTACTTTGGACATTAATGATTTCATGTAA 993 0.3696 MGRSPCCDNKNGLKKGPWTNEEDNMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHTPRLDHLFDISSINILRSALLGGTNPSFLSLLGGAQALMNPELLKLAATATLLNNNNNNMNLVSQNPQQINNVANCTQQLVQSQVYPQDQFQIPTQIHNVNNGLLGNMSCSSSAENSNGYFGEDLISKQYSELFHCLNDVNKNNTGYESVISSTPLSTTPTPTPLNSPSTYVNSNTEEERDTYCSDIFKFEIPEGTLDINDFM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4197 330 SMART sant 67 115 IPR001005 -
Tpr7g4197 330 SMART sant 14 64 IPR001005 -
Tpr7g4197 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 324 - -
Tpr7g4197 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr7g4197 330 MobiDBLite consensus disorder prediction 279 303 - -
Tpr7g4197 330 Gene3D - 70 117 - -
Tpr7g4197 330 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr7g4197 330 Gene3D - 14 67 - -
Tpr7g4197 330 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Tpr7g4197 330 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tpr7g4197 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tpr7g4197 330 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tpr7g4197 330 CDD SANT 70 113 IPR001005 -
Tpr7g4197 330 CDD SANT 17 62 IPR001005 -
Tpr7g4197 330 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tpr7g4197 330 PANTHER TRANSCRIPTION FACTOR MYB41 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4197 Tpr-Chr7 51054049 51055702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4197 1 330 MYB Transcription Factor Family AT4G21440 49.587 1.30e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr7g4197 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4197 K09422 - gmx:102668351 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4197 7 51054049 51055702 Tpr7g4197 7 51054049 51055702 ECH
Tpr7g4197 7 51054049 51055702 Tpr7g4197 7 51054049 51055702 PCT