Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4171 ATGGACATGGATTCCACAGGTGGTTCTTCTTGTTGGCTTTATGATTATGGCTATGATATTTCTGTTGCTGCAGCTGATTTCATGGCTTCTGATCACTCCGCTGCTGCTTCTGTTTTCACCTGGAATATGCCTCAGTCTCAGTCTCAACCTCAGACTCATATCATCAAGCCTCCTTCATCCAATATCAGCTTGGAAATGGAATACTCACTGGACTCAACTGTACTGGAAAGTGGTCCTTCAAATAAGCGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTGGCTCCAAGGCATGTCGCGAGAAATTGCGCAGGGATAAACTGAATGACAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAAGTTACCTTATTAAATGATGCGGTTCGTGTGGTTACACAATTAAGAAATGAAGCTGAGAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCCAGCTTCCTCTCTAATGCCATGGCTGTTAAAGGACAAACTGCTAGTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCGGTTGCTTAA 798 0.4261 MDMDSTGGSSCWLYDYGYDISVAAADFMASDHSAAASVFTWNMPQSQSQPQTHIIKPPSSNISLEMEYSLDSTVLESGPSNKRLEMEYSLDSTVLENGPSKRLRTESYASGSKACREKLRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAVKGQTASANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4171 265 SMART finulus 114 165 IPR011598 GO:0046983
Tpr7g4171 265 PANTHER BHLH TRANSCRIPTION FACTOR 1 265 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Tpr7g4171 265 Pfam Helix-loop-helix DNA-binding domain 112 159 IPR011598 GO:0046983
Tpr7g4171 265 Gene3D - 112 190 IPR036638 GO:0046983
Tpr7g4171 265 CDD bHLH_AtILR3_like 113 188 - -
Tpr7g4171 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 175 IPR036638 GO:0046983
Tpr7g4171 265 Coils Coil 149 211 - -
Tpr7g4171 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983
Tpr7g4171 265 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4171 Tpr-Chr7 50796682 50799276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4171 96 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.322 5.65e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4171 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4171 - - mtr:MTR_2g089000 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4171 7 50796682 50799276 Tpr7g4171 7 50796682 50799276 ECH