Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4161 ATGGAACCAATTTGCTCTATTACATCGGCTTGTGCCACTCAAATCTCTGCACTTCTTTCTCCTCCCTCACCTAACCAAATTCAGGAATATTATCACAACATTTTCTCTTCAACGCACTGCAATAGCATCACTGTCAAACAAGATGACAACTTTGGAAAAGGTCTCTATGCTGCAACGGACTTCAAAGAGGATGAACTTGTTCTCAAGGACCAAATGCTTGTTGGGGCTCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATCGGTTCCATAGAAACTCAAATTGGTAGGAGGCTTTACTTGACACAATTAAGGGCCAATGAGAGTCATGATTGTGATGAAGGCAGCTCTTCAAAGTCTTCGAAAAACTATCATCAAATGGATTCATCTGATGAAGAGGAGAGCACTTGGCAATGCAGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTGTCGAATCATTGATGAATGGCCAATTGAAATTGCCTTACTCTGAGAAGTTCTCCTTGCCTCCAGCTGTTCCGTGCCATGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTGTGATCCAAGACGTAGGGAGGCACTACTTAAATTCGTGAAACACGCTAATGAAACAAATGATATATTTCTCCTTGCTGCAAAGGTCATTTCTTCTACCATATTAAGGTACCGCAAGTTAAAAGCAAATTGTCTTGCAGAGAAAGGGAAAAATGTGGCATCCTGTGTTCCAGACCACCCTAATTTCTCCCTTCTTTTGGAAGCTTGGAGGCCTATAACAATGGGATACAAAAAAAGGTGGTGGGACTGCATTGCATTACCAGATGATATTGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATAAAAGAGTTGGCATTCGAGTCTCTCCAACTTCTTCAGACAGCAATATTTGACAAGGAATGTGAGCCGTTATTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCCTTGGAGGATTACTTTTTATACATCGATGATATGAAGAATCCTGACAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGATTATTCTACTAGTTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGTATGAATCATTCATGTTGTCCTAATGCCAAAGCTTTCAAAAGAGACGAGGATAGAGATGGTCAAGCAACAATAATTGCACTGAGGCCCATCTGTAAGGGAGAAGAGATAACAATTTCATATGTTGATGAAGACCTTTCATTTGAGGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAAATGCATTGAAGAAGAACCATAA 1464 0.4078 MEPICSITSACATQISALLSPPSPNQIQEYYHNIFSSTHCNSITVKQDDNFGKGLYAATDFKEDELVLKDQMLVGAQHSFNKIDCFVCSFCFRFIGSIETQIGRRLYLTQLRANESHDCDEGSSSKSSKNYHQMDSSDEEESTWQCSSGSSKTKVPLPEGVVESLMNGQLKLPYSEKFSLPPAVPCHGGCGEAYYCSMSCAEADWESSHSLLCTGESCDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYRKLKANCLAEKGKNVASCVPDHPNFSLLLEAWRPITMGYKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLQTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPLEDYFLYIDDMKNPDKEEAEKITQPILDALGEDYSTSCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRPICKGEEITISYVDEDLSFEERQASLADYGFRCRCPKCIEEEP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4161 487 Gene3D SET domain 378 486 IPR046341 -
Tpr7g4161 487 SMART set_7 41 463 IPR001214 GO:0005515
Tpr7g4161 487 CDD SET_SMYD 396 482 - -
Tpr7g4161 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Tpr7g4161 487 Pfam MYND finger 185 213 IPR002893 -
Tpr7g4161 487 Gene3D - 124 217 - -
Tpr7g4161 487 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
Tpr7g4161 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Tpr7g4161 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
Tpr7g4161 487 SUPERFAMILY SET domain 40 480 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4161 Tpr-Chr7 50743281 50748666 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr7g4161 SET 9.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4161 - - gmx:100803651 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4161 7 50743281 50748666 Tpr7g4161 7 50743281 50748666 ECH