Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4147 ATGGAGGTGTTTGGGATAAAGGGTTTTTTCATCTTTGTTTTCTGTTTGTGGATTTCAAATGAAGTTATGGCAGCAACCATTGGAAACTCTAGTGTTTCTTCTAGACCTAGTGTTTTGAAAATTGGAGCATTGTTTACTGTTAATTCTGTGATTGGAAGATCAGCTAAACCTGGAATCATGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTTCCTGGTGTTAAACTTGAAGTTATTTTACATGATACAAATTGCAGTGGATTTCTTGGAACAGTGGAAGCTTTGCAGTTGATGGAAAATGAAGTGGTTGCTGCAATCGGTCCACAATCTTCAGGAATAGCTCATATCATCTCTCATGTAGCTAATGAACTCCATATACCTCTTCTTTCATTTGGGGCAACAGATCCAACTCTATCATCTCTGCAGTTTCCGTATTTCGTCCGAACCACGCACAGTGACTATTTTCAGATGTATGCTATTGCAGACCTTGTTGATCATTATAGATGGAGGCAAGTAATTGCCATTTTTGTAGATGATGATAATGGAAGAAACGGTGTTTCAGTACTCGGAGACGCGCTAGCTAAGAAACGCGGCAAGATATCTTACAAAGCGGCATTATCTCCTGTAGCGACCAAGAGTGATATCAGTGACTTGTTAAATAGTGTTAACTTAATGGAATCAAGAGTCTTTGTTCTCCATGTTAATCCTGATTATGGTTTGGCTATTTTTTCTATTGCAAAGAATCTCGGAATGATGACTAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCAATGGAGCCAGTTGATGCTAACACATTAAATCTCCTTCAAGGTGTTATTGCTTTGAGGCATCACACTCCTGATACTAATCTCAAAAAGAGTTTTTTCTCTAGGTTGAAGAACGCAAACGGCACGAAAACTTCAAGCTTCAACTCTTATGCTTTATATGCATATGATTCTGTCTGGTTAGCGGCTTATGCTCTTGATACTTTTTTCAAAGAAGGTGGAAACATATCTTTCTCATCTGATCCTAAGTTAGTTGACACAAAAGGAAGTATGTTGCATTTGTCTTCGCTTCGTGTTTTCGATGGTGGCCCGTCGTTTCTCCCTACACTTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTCGCTAACGGAAAGGACCTAATTCAACCATCATATGATATCCTTAACATCGGAGATTCTGGTTCCCGGAGAGTCGGTTATTGGTCTAATTACTCTGGTTTATCAGTTTTAGCTCCTGAAATTTTATACAAGAAACCACCTAACACTTCAACAAGCAATCAAAAACTGTTCAGTGTTTTGTGGCCCGGAGAAACTGTAGCTATACCAAAAGGATGGGTTTTTCCCAACAATGGAATGCCTTTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGAGTTTGTTTCTAAGGACAAGAATCCACCTGGAGTTAGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTTCCGCGAAAATATATATTATATGGAGATGGTAATAGAAATCCCAGCTACAGCGAGCTTGTCAATCAGGTCGCACTTAATAACTTCGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGCTTTTGGATTTCACTCAACCTTTTATGGAGTCCGGGCTTGTAGTTGTTGTTCCTGTCAAAGAAATCAAATCAAGCCCTTGGGCTTTTCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGCGCCTTTTTTCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGACACAATCCTGAGTTCCGAGGTCCACCGAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGCGGTCTTGGGCGATTCGTGCTAATCATATGGCTTTTTGTAGTATTGATTATCAATTCAAGCTACACGGCAAGCTTAACATCCATCCTCACAGTGCAGCAACTATCCTCACAAATTGAAGGAATTGATAGCTTGATATCAGGTACTCAACCAATTGGAATTCAAGACGGGTCATTTGCAAGGAGGTATCTGATAGATGAACTCAATATACAACCATCTAGGATAGTTTCATTGAAAAATCCAAAGGCGTATGTCGATGCCCTTACGCGTGGACCAAAAGGCGGAGGAGTTGTGGCTATTGTTGATGAGCTTCCTTATATTGAAATCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCGCCCCTTGCTGTCGATATGTCAACTGCCATACTTCAACTCTCAGAAAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTCAAAACAAAATTGTGCTGCAAAAGTTGATGACGTTGATTCAAATGAACTATCTCTTAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTCTCATTGCTATGACTGTATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGAGAGTGAGGAGGAAGTTGACCAGGAAAATCCGTCAAATAGGCGTAGAAGAAGTTTTCGATCTTCAAAAAGCTTCAAAGAGTTGTTTGAATTTGTGGATAAGAGAGAAAGAGAAATCAAGGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGTGACGACCAATTTAGTTCACTTACCTAA 2787 0.3994 MEVFGIKGFFIFVFCLWISNEVMAATIGNSSVSSRPSVLKIGALFTVNSVIGRSAKPGIMAAIEDVNANKSILPGVKLEVILHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHIISHVANELHIPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADLVDHYRWRQVIAIFVDDDNGRNGVSVLGDALAKKRGKISYKAALSPVATKSDISDLLNSVNLMESRVFVLHVNPDYGLAIFSIAKNLGMMTSGYVWIATDWLPSKLDSMEPVDANTLNLLQGVIALRHHTPDTNLKKSFFSRLKNANGTKTSSFNSYALYAYDSVWLAAYALDTFFKEGGNISFSSDPKLVDTKGSMLHLSSLRVFDGGPSFLPTLLRMNFTGLSGQIQFANGKDLIQPSYDILNIGDSGSRRVGYWSNYSGLSVLAPEILYKKPPNTSTSNQKLFSVLWPGETVAIPKGWVFPNNGMPLRIAVPHRISYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRKYILYGDGNRNPSYSELVNQVALNNFDAAVGDVTIVPNRTRLLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIQPSRIVSLKNPKAYVDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGQEFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLSKQNCAAKVDDVDSNELSLSSFWGLFLICGIACLIAMTVFFVRVFCQYMKFIPESEEEVDQENPSNRRRRSFRSSKSFKELFEFVDKREREIKEILRQKSKKRRRDDQFSSLT* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4147 928 Gene3D - 154 427 - -
Tpr7g4147 928 SMART GluR_14 475 817 IPR001320 GO:0015276|GO:0016020
Tpr7g4147 928 Gene3D - 785 815 - -
Tpr7g4147 928 Gene3D - 586 706 - -
Tpr7g4147 928 Gene3D - 732 784 - -
Tpr7g4147 928 PANTHER GLUTAMATE RECEPTOR 3.4 26 913 - -
Tpr7g4147 928 SUPERFAMILY Periplasmic binding protein-like II 449 817 - -
Tpr7g4147 928 Pfam Receptor family ligand binding region 59 410 IPR001828 -
Tpr7g4147 928 Gene3D - 469 585 - -
Tpr7g4147 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 52 68 - -
Tpr7g4147 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Tpr7g4147 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Tpr7g4147 928 CDD PBP1_GABAb_receptor_plant 40 429 IPR044440 -
Tpr7g4147 928 Gene3D - 60 402 - -
Tpr7g4147 928 Coils Coil 900 920 - -
Tpr7g4147 928 SUPERFAMILY Periplasmic binding protein-like I 34 466 IPR028082 -
Tpr7g4147 928 CDD GluR_Plant 473 815 - -
Tpr7g4147 928 PIRSF IGluLR_plant 6 927 IPR017103 -
Tpr7g4147 928 Pfam Bacterial extracellular solute-binding proteins, family 3 531 816 IPR001638 -
Tpr7g4147 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 913 - -
Tpr7g4147 928 Pfam Ligand-gated ion channel 817 848 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4147 Tpr-Chr7 50568941 50574946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4147 35 786 Ion Channels AT1G05200 69.180 0.0 1121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4147 K05387 - gmx:100799912 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4147 7 50568941 50574946 Tpr7g4147 7 50568941 50574946 ECH
Tpr7g4147 7 50568941 50574946 Tpr7g4147 7 50568941 50574946 PCT
Tpr7g4147 7 50568941 50574946 Tpr7g4146 7 50557023 50562296 PCT