Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4118 ATGGACGAGGTTCCTGTGATTGAAGAAAATGAAACAAAGTCTGAAGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAAGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGTATATGCCTTGAAGCTTTTATTGATAGTGATCCTTCAACGGTGACGAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTGGAATGGTGTCAAAGGAGTTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAGGATCCAACAGGCCAGGAATTGCTTGAGGGTGTTGAAAGAGAGAGGAACTTTAGGGTCAATCCGTCTAGAAATGCTACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTGCTGCTTCTTCCTCTCCACCTCAGAGAGGGGATGGTGAATCAACTCCTTCTATCACTCTATCTCCAACTTTTTCGACTGGAGAAGAACCACCACAGCTTACTTTAGTTCACCCAGTTCAAACCGACCAGGTTTCTGCTTCAGGATCCGGGTCTACGGCTCTTGCTACTGACAATCAGGGATTATCTTATAACAACAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGCCAAGACAGAGCAGGACCATCAGATCTCCAGTCGTTTTCAGATTCTCTGAAATCAAAACTAAATGCCGTGTCTACAAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGGTGGTTCTCACGGAACAGCTCTGTAACTGATCTTGGATCTGAAGTTAGGAGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGAATGATGGAACGCTTGGAGACCAGAGACAATAATAGACCCAGTAGCAATTCTTCTCCAAGTAATTCAGAGGATGGTCCAGTTCAGGAATCAAATGATCGGCATTTAACAGACACTGAAAGGGACAGTCCTTTGATAGACAATAACACCAAAACATCTTGCACTGCAGGTTCTAGTTCAAATTAA 1173 0.445 MDEVPVIEENETKSEAHLTSAAAFVEGGIQDACDDACSICLEAFIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEGVERERNFRVNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPMAAASSSPPQRGDGESTPSITLSPTFSTGEEPPQLTLVHPVQTDQVSASGSGSTALATDNQGLSYNNRRSPNQSSPSSQDRAGPSDLQSFSDSLKSKLNAVSTRYKESISKSTRGWKERWFSRNSSVTDLGSEVRREVNAGIATVSRMMERLETRDNNRPSSNSSPSNSEDGPVQESNDRHLTDTERDSPLIDNNTKTSCTAGSSSN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4118 390 MobiDBLite consensus disorder prediction 182 275 - -
Tpr7g4118 390 MobiDBLite consensus disorder prediction 174 275 - -
Tpr7g4118 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 390 - -
Tpr7g4118 390 SMART ring_2 37 77 IPR001841 -
Tpr7g4118 390 MobiDBLite consensus disorder prediction 375 390 - -
Tpr7g4118 390 MobiDBLite consensus disorder prediction 333 390 - -
Tpr7g4118 390 SUPERFAMILY RING/U-box 30 84 - -
Tpr7g4118 390 MobiDBLite consensus disorder prediction 357 374 - -
Tpr7g4118 390 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Tpr7g4118 390 MobiDBLite consensus disorder prediction 341 356 - -
Tpr7g4118 390 Pfam Ring finger domain 36 77 IPR001841 -
Tpr7g4118 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Tpr7g4118 390 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4118 Tpr-Chr7 50250301 50254466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4118 34 85 C3H Transcription Factor Family AT5G15790 44.231 5.98e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4118 K19043 - gmx:100780275 600.897