Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4099 ATGAGTAATTTTAATGATGATAGAAACCATGATGATGAACATAATTATTATCCATTTGGAAATATCTATCGTGGATCAAGTCAGAGCAATTTCAACAAAAAAATCTTGTTAACAGCCATAGTTTCTTTAATACTTGTATTAATTTTGGTATTTGCTCTTCATCTCTATGCAAGATATGTTCTCAAACGCCAAGCTAGCCGTAGAGCCGCCATTCATCAACTCAGCCTCACCGTCGCTCAAGCTCATACACAATTCACCGAACCACCTAGCACTGGACTCGACCAAACCCTCATCGCTACTCTTCCAACTTTCCTCTTCAAAGGTAAACAACAAGACAAAAAACAAAACAATGATGTTTTGAATGTTGTTGAATGTGCAGTGTGTTTGAGTGTTGTAGAGGATGAAGAAATGATGAGGTTGCTTCCAAATTGTAAGCATAGTTTCCACGTGGGTTGCATCGATAAGTGGTTAGCTTCACATTCCACGTGTCCAATTTGTCGAACCAAGGTTGAACCGCGACTAGAACCAGAGGCACGTGAGGGTCCCACTTTGTTCGAACCACCATTAGAAGGTACATCGGATGGTGATGGTGGTGTTAGTGGGTCCCCAAAAAATATTTCACGGTTGAGCTCTTTTCGAAGGATTCTTACTAGAGATAGATCTTCGAGACGAATCCAACCTTCTAGTATTCCACGTGATGATGTTATTATTGATCGTGATTTAGAAAGGCAATAA 735 0.4 MSNFNDDRNHDDEHNYYPFGNIYRGSSQSNFNKKILLTAIVSLILVLILVFALHLYARYVLKRQASRRAAIHQLSLTVAQAHTQFTEPPSTGLDQTLIATLPTFLFKGKQQDKKQNNDVLNVVECAVCLSVVEDEEMMRLLPNCKHSFHVGCIDKWLASHSTCPICRTKVEPRLEPEAREGPTLFEPPLEGTSDGDGGVSGSPKNISRLSSFRRILTRDRSSRRIQPSSIPRDDVIIDRDLERQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4099 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 173 IPR013083 -
Tpr7g4099 244 MobiDBLite consensus disorder prediction 177 206 - -
Tpr7g4099 244 CDD RING-H2_PA-TM-RING 124 167 - -
Tpr7g4099 244 SMART ring_2 125 166 IPR001841 -
Tpr7g4099 244 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Tpr7g4099 244 MobiDBLite consensus disorder prediction 218 244 - -
Tpr7g4099 244 Pfam Ring finger domain 124 167 IPR001841 -
Tpr7g4099 244 SUPERFAMILY RING/U-box 124 173 - -
Tpr7g4099 244 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 29 244 - -
Tpr7g4099 244 PANTHER RING FINGER DOMAIN-CONTAINING 29 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4099 Tpr-Chr7 49999211 50000429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4099 5 244 C3H Transcription Factor Family AT2G42360 43.359 1.04e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4099 K19038 - gmx:100796057 203.756