Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4081 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATCGAGATAGAAGATTCCCTGGAAATCAAGAAGAGTTTGAGCATGCGTTGATTACTTCAACCACCGTTTATGTTGGGAATATGTCGTTTTACACTACGGAAGAACAAATTTATGAACTGTTTTCACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACTAAAACTCCTTGCGGTTTTTCCTTCGTTTCATATTACTCTCGCGAGGATACTGAGGATGCCTGCAAATATATAAGTGGAACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGGCAATGGGGTCGGGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCAGGTAGAGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAGAGGCATCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCTGTTATTCCTTCATATGGTGGTAGACATGGTGGTGGCCATGGTCATGGTGGTGGTTATGGTCATGGTGGTTCTCGTCGGCATGGTAGAGATTACCCTAGGAAGAGATATAGAGACGATGATCGCCACCACACAAATGAGCCCTCAAAAAGATCATCAGATCATGAATCTCGGAGGAACTCCGACCATGAATCTAGACCGCAGGAAAAAAATCCACGATTTCGGGAGAGTGGTGATTCTGACGATGATGAAGAAGATGATCGAAAAAGGCGGGGTTAA 786 0.4478 MASLFKDPAKISAYRDRRFPGNQEEFEHALITSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFSFVSYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSYGGRHGGGHGHGGGYGHGGSRRHGRDYPRKRYRDDDRHHTNEPSKRSSDHESRRNSDHESRPQEKNPRFRESGDSDDDEEDDRKRRG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4081 261 CDD RRM_NCBP2 36 113 IPR034148 -
Tpr7g4081 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Tpr7g4081 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Tpr7g4081 261 MobiDBLite consensus disorder prediction 185 261 - -
Tpr7g4081 261 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 211 IPR027157 GO:0000339|GO:0005846|GO:0045292
Tpr7g4081 261 Gene3D - 6 151 IPR012677 -
Tpr7g4081 261 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 211 - -
Tpr7g4081 261 SMART rrm1_1 35 108 IPR000504 GO:0003723
Tpr7g4081 261 MobiDBLite consensus disorder prediction 202 261 - -
Tpr7g4081 261 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4081 Tpr-Chr7 49875166 49878710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4081 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 1.05e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4081 K12883 - gmx:100789535 399.438