Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4067 ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTTCATGGACGATGAAGAAACTTCACAGCTTGTTCACCATTCTCGCCATGTCAAACATCAACAGAACAACCGCGACCCACTCTTCATCGACCAACAACAACAACAGCACCAAGTCGAAGAAGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATCAGCAAGAGCACGATGAGGAAGAAGATGAGCAAGGAGAAGAAGAGGAAGATGAAGAAGAGGCTGAAGATGATGATGGTGGTGATGAAGATGAGCAGCACAATAACGATGACAAAGAAAAATCACAGGATTCCGATGAAGACCCATCTTCTGATGATGAAGAAAAGCCTGAATATGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTCGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGGCTGGGGAACAATGAATGTCCTGCTTGCCGCACACACTGCGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAACGGCAATCTGAAGCACTAGGCAAGAAACGTAAAGATACACCAGGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAATCAAACGACTGATGTTCAAGGATCTGAAAATGACGAAAATGGCAATAATGACAGAGACTCGTCTTCTGGCGATGAGCGCGGCACAGAACACCGACAGAGAAAACGAAAGAGATGGACCAGGGTTCGCCCCTCTCAGCCCTCATCATCACTGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACGGATATAAATAGAGAAAATCGAGGAACTTCAAGGCAGGTGACAAAACCTAGAAAGCTTACTTGGGGTAGGGGTGGTTTTCGGAGCAACACGAGATATGGAAGTGGTGGTGGTAGTAACAGCAAAAATTCCCGCAGTGGTCGAATGTCTAAGTTGGTTGACCATCTCAAAAACTTGGATGAAAACATTGCTGAGTTTGAAGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACTACACCAAGTTTGGAGAAGCTTCACCTGAGTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAGACACCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCGGTGTAAATTGTGACAAGTCAACTGATGAGAATTCACTCCCGGATTGTGATGAGCTAACATCACTGGTTATAGATCCACAAAAAGATGAACTAGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG 1545 0.4298 MPAQKRSLPEFMDDEETSQLVHHSRHVKHQQNNRDPLFIDQQQQQHQVEEDEEEEEDDDDDDDDQQEHDEEEDEQGEEEEDEEEAEDDDGGDEDEQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDTPGSSSFVTRSQRNQRNLQSRRQNQTTDVQGSENDENGNNDRDSSSGDERGTEHRQRKRKRWTRVRPSQPSSSLASPDGGSVESDTDINRENRGTSRQVTKPRKLTWGRGGFRSNTRYGSGGGSNSKNSRSGRMSKLVDHLKNLDENIAEFEVHLMFISPDKETTPSLEKLHLSCRPTLSVKNLYEYVASQTPLKAEEVEILAVKGCSGVNCDKSTDENSLPDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4067 514 MobiDBLite consensus disorder prediction 235 378 - -
Tpr7g4067 514 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Tpr7g4067 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 206 IPR013083 -
Tpr7g4067 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 513 - -
Tpr7g4067 514 Coils Coil 68 88 - -
Tpr7g4067 514 SMART ring_2 136 175 IPR001841 -
Tpr7g4067 514 SUPERFAMILY RING/U-box 123 190 - -
Tpr7g4067 514 ProSiteProfiles Zinc finger RING-type profile. 136 176 IPR001841 -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 1 119 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 8 23 - -
Tpr7g4067 514 Coils Coil 39 59 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 328 342 - -
Tpr7g4067 514 CDD RING-HC_RING1_like 136 176 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 361 376 - -
Tpr7g4067 514 Pfam Zinc finger, C3HC4 type (RING finger) 135 175 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 246 278 - -
Tpr7g4067 514 Coils Coil 202 225 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 279 299 - -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 310 327 - -
Tpr7g4067 514 PANTHER OS11G0578200 PROTEIN 1 513 IPR044592 -
Tpr7g4067 514 MobiDBLite consensus disorder prediction 47 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4067 Tpr-Chr7 49794432 49801311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4067 134 259 C3H Transcription Factor Family AT2G30580 28.058 8.79e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4067 K10695 - gmx:100776547 571.622