Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4054 ATGGATCATAATAAACAAAGTGTTCAACCATCTTCTACAATCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATCAGATGAAAATTCTCTTTTCCAAACTCAACTCTCTTCTCCCTTATAATCCCAAGGTGATTTTGGTACCATTAATTGATCAAGTAGATGAGACTATAAACTACATAAAGAGTTTAGAGACAAATGTGAAGTTGGCAAAGGAGAAAAAAGAAAGTTTATTGAGAAATAAGAGATCACGTAGTGGCTGTTCGAGTTCTTGTGGAGCAAAAGGAAGCATAAAATCACCAAAAATTGAGATTCATGAAATGGGTTTCTCTTTACAAATCATTGTGACATGTGGGGTTGATGATCAATTCATTTTCTATGAAATTATTCGAATACTCAATGAAGAGAATGTCGAGGTCATTTCTGCAAATTCTACCTTGACCGGAGATTCAATTTTTCATATTGTGCATGCTGAGATTCCGCAATCTTTATTTCAATTTGGAGGGACCAAAGTAAGTGACAGATTGAAAAGTTTTGTGAACGGATTTGTGAGTGAGGTGCAAATAGATCCTCATTTGTTGGATTTTGAAATTGGAACTGAGAATTGGGAGCTACTACATTCTATAGTAAACAAGAACAATTAA 648 0.3395 MDHNKQSVQPSSTIKVERKIVEKNRRNQMKILFSKLNSLLPYNPKVILVPLIDQVDETINYIKSLETNVKLAKEKKESLLRNKRSRSGCSSSCGAKGSIKSPKIEIHEMGFSLQIIVTCGVDDQFIFYEIIRILNEENVEVISANSTLTGDSIFHIVHAEIPQSLFQFGGTKVSDRLKSFVNGFVSEVQIDPHLLDFEIGTENWELLHSIVNKNN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4054 215 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Tpr7g4054 215 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 188 IPR015660 GO:0003700|GO:0006357
Tpr7g4054 215 Coils Coil 62 82 - -
Tpr7g4054 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 84 IPR036638 GO:0046983
Tpr7g4054 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Tpr7g4054 215 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 188 - -
Tpr7g4054 215 Gene3D - 7 91 IPR036638 GO:0046983
Tpr7g4054 215 SMART finulus 19 71 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4054 Tpr-Chr7 49712921 49714142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4054 16 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.418 2.18e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4054 HLH 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4054 - - mtr:MTR_2g090425 259.61