LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g4051	ATGGGTTGCATAAATTCCAAGAGTTCAGCTGTGGATGATAGTAGAGAAGGTTTGACAAATGATTCGGGATCATCTAAAAAAAGGAACTTTGAGAAGAAGGTTTCAGGATCAGATTCGAAGAAAAGGGTTGACGGAGATTTGGAGAATGATAAGTTATTGGACGGTATTGGCATGAAAGTTTCATTGATTGACAAGGAAGCTAATAATGGTTCGGTGTGGTTGTATGATGATCAGAATGAGAAGAAGAAAATGGAGAAACCCGAAGTGTCTGTTGTTGTTGATTGTTCGCGTATTGGAAGGGTTCCAAAAGCGTTAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAATGGATGGATACCGCGAAGTGCACATACTTTTGAGAAATATGATAAAATTGGTGAAGGAACTTACAGCACTGTTTATAAGGCACGTGATTTGATAAACCAAAAGGTCGTTGCCTTGAAGCGGGTACGCTTTGATAATCTTGATCATGAGAGTGTCAAGTTCATGGCAAGAGAAATAGTTTTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCGCAGTCGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCAACAGCACCTGACATTAAGTTTTCAGAACCACAGATTAAATGCTACATGAATCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGTGGTATCCTCCACCGTGATATAAAGGGCTCAAATCTTCTCATCGACAATAATGGCATTTTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGATCCTGACCAAAGCGTTCCGTTGACCAGCCGGGTAGTAACACTGTGGTATAGACCACCAGAACTTTTACTTGGATCATCAAATTACGGAGTTGCGGTGGATATGTGGAGCACTGGTTGCATACTCGGTGAACTATACTCTGGCAGGCCTATATTGCCAGGAAAAACCGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGATCACCATCTGTGGACTATTGGCAAAAACTGCGGCTGCCACATTCTACAGTATTCAGGCCTCCACACCATTATAGGAAATGCATTGCTGATACATTTAAAGAATTTCCATCTTCTGCTGTGAGGCTTATAGAGACCCTACTCTCTTTAGATCCTACACACCGAGGAACAGCAGCTACAGCTCTGAAGAGCGAGTTCTTTTCATTGGAACCCCTTGCTTGCGATCCATCAACTTTGCCAAAATATTCTCCCAGCAAAGAGATTGACACTAAATTGCGGGGAGAATCAAGAGGAAGGCAAGGAGCTCTTGAGGGTAAGGAGCAAAAAGTTGGGCCACGAGTTAGACAAGAGAAAGAAACTCAGTCATTTGTCTTATCCAAAGCCAATGCCGACTCCCGCATTTCAGTGCAGCAAGGGCAACGCTTTCCAAACATGACGAGCAAGAATGAACAGTTCAACCCTCACAGAGTACCTCCTGTATCTGGATTTATGGGTTTTCGACATAAACAGTCAGAAGGTGCTAAAAAGAAGGTTAATTATTTCTCTGGGCCTCTTGACCAGAGACCTTCACATTCAGGGTTACTGGTTCCAGATTCGGGCCGACACAAATATGGAAAAGAAGCTGGTGAGAGGTTTCTTCCTGTTTCAAATAAAGTCAATCTATCAAAGCCATCTAGAACTTCATTGTCTGGAAATCAAAAAGTAAATCCAGCTTCTTTGAGTCCACAAGATACAACTCAAGTACAAAAATCTTTAGGGTTGAGTAACGGATCAGAGTCAAGAAGGCGGCATGATAGAAAACACCATTCTCACATAGATGATCTCAGCCAAACAGAAAATGGAAAGGACGGGCATGCATCCAGCGGAAACAATCTCTACATGTCTGGTCCGTTGCTGGTTTCCAATATGGATCACATGCTCAAAGAGCGGGATCGGAAGATCCAAGAATATTCAAGGCGGACCAGAAATAAATAG	2037	0.4227	MGCINSKSSAVDDSREGLTNDSGSSKKRNFEKKVSGSDSKKRVDGDLENDKLLDGIGMKVSLIDKEANNGSVWLYDDQNEKKKMEKPEVSVVVDCSRIGRVPKALEGEQVAAGWPTWLSSVAGEAINGWIPRSAHTFEKYDKIGEGTYSTVYKARDLINQKVVALKRVRFDNLDHESVKFMAREIVFLRRLDHPNVIKLEGLITSQSSRSLYLVFEYMEHDLTGLATAPDIKFSEPQIKCYMNQLLSGLDHCHSRGILHRDIKGSNLLIDNNGILKIADFGLANFFDPDQSVPLTSRVVTLWYRPPELLLGSSNYGVAVDMWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSVDYWQKLRLPHSTVFRPPHHYRKCIADTFKEFPSSAVRLIETLLSLDPTHRGTAATALKSEFFSLEPLACDPSTLPKYSPSKEIDTKLRGESRGRQGALEGKEQKVGPRVRQEKETQSFVLSKANADSRISVQQGQRFPNMTSKNEQFNPHRVPPVSGFMGFRHKQSEGAKKKVNYFSGPLDQRPSHSGLLVPDSGRHKYGKEAGERFLPVSNKVNLSKPSRTSLSGNQKVNPASLSPQDTTQVQKSLGLSNGSESRRRHDRKHHSHIDDLSQTENGKDGHASSGNNLYMSGPLLVSNMDHMLKERDRKIQEYSRRTRNK*	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	563	638	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	572	610	-	-
	Tpr7g4051	678	SMART	serkin_6	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g4051	678	Pfam	Protein kinase domain	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g4051	678	Gene3D	Transferase(Phosphotransferase) domain 1	220	458	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	1	45	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	440	476	-	-
	Tpr7g4051	678	CDD	STKc_CDK9_like	137	421	-	-
	Tpr7g4051	678	SUPERFAMILY	Protein kinase-like (PK-like)	131	422	IPR011009	-
	Tpr7g4051	678	PANTHER	CYCLIN-DEPENDENT KINASE	1	674	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	1	18	-	-
	Tpr7g4051	678	ProSitePatterns	Protein kinases ATP-binding region signature.	143	166	IPR017441	GO:0005524
	Tpr7g4051	678	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	257	269	IPR008271	GO:0004672\|GO:0006468
	Tpr7g4051	678	Gene3D	Phosphorylase Kinase; domain 1	124	219	-	-
	Tpr7g4051	678	PANTHER	CELL DIVISION PROTEIN KINASE	1	674	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	19	45	-	-
	Tpr7g4051	678	MobiDBLite	consensus disorder prediction	440	470	-	-
	Tpr7g4051	678	ProSiteProfiles	Protein kinase domain profile.	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g4051	Tpr-Chr7	49687320	49692277	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g4051	129	464	Core Cell Cycle Gene Families	AT5G10270	48.295	3.29e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Tpr7g4051		Pkinase	1.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g4051	-		K08819	gmx:100775462	946.421