Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4048 ATGGAGCCTTTGTTAGGAGGCGAAAGCAGTGGCATAAGAAACCGTTCGCGAGGAGGGAGAGTTCATCGCACAGATGCTATTACCTACGGTTCTAACTACGAGAAAGCCGCTGCACTCATCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAGCTTCTGGAATCATCAAGCTTTCAAAGTTATTCCAGATATTATTTTATGTTCACGAAATTAGATCTCCTCTGGTCTCTTTGTTATTTTGCTCTGATAGTCCTGAATTTCTTGGAGAAACCTCTATGGTGTGAAAAGACCACACATTCTTGCAACGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTATTATTTATGAGGGAATAATTCTTGTTTTGCTAAGCATTCATACTTTCTGGCCGCTATCGTACGAAGGGCCCCCTATATTTTGGAAAAGTCCTATTAATTTATTGAAGGCCTTCTGTTTGTTAGTTATCCTTGTTGATATGCTGGCTTATGCTCTGTATATATCCCCAGTGGCTTTTAATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTAAATATTAGGGAGCTACGAGAAACTGTCATCATCGTGACTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGGCTTCTGTTTCTTGTTTTTGCAAGTTGGATAGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTATAGTGCAACGTTATATCAGATGTTTCTTTTATTTAACACGGCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCGCGTTGGTCTATCCTGTTTTTCATTCTATTTGTGCTGATTGGAGTCTACTTTGTTACAAACTTGATCCTTGCCGTTGTTTACGATAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTCTGAGATGGATCGTATGAGAAGAGCTATGTTGGAGAAAGCTTTTAATCTCCTAGACACAAATAATGATGGATATCTCAAGAAAGATCAATGCATTAGGCTGTTTGAGGAGGTGAACAAGTACAGGACTTTGCCAAAAATCTCCAAGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGACACTCATGATGTAAAGATTAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAGATTCCAGAAGGAGGATGTGAATTCTTACTTTGACTATTTAGGATTCTACCATTCATCCACCTCAAAGAGATTGAAAGCATTCGTAAAGAGCACCATGTTTGGATACATAGTGACCTTTGTTCTCATATTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGACGTAGAAGAAAATTCTGCTCAAAAGGCATGGCAAGTGGTTGAGTTCACTTTCGGGTGGATATATGTAATAGAAATGATACTTAAGGTTTACTCTTATGGATTCGAAAACTATTGGCGGATTGGTCAAAATCGCTTTGATTTTGTGATCACAGTGACAATTGCCATTGGAGAAACTATAGATTTTGCTTCACCTGATGATGCTCTGCCATTTTTCACAAATGGAGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGTATGTCCAGCGATTTCGAAGTTTCGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATACCTCGGGACCATATTTTGCATATTGTGTATTTATTGCTCACTTGGTGTCCAGATTTTTGGTGGATTAGTTAATGCTGGAAACCCAGATTTGGAAGCCACAGACCTCGCTGCTAATGACTATTTACTTTTTAATTTCAATGATTATCCAAATGGTATGGTGACACTATTCAATTTGCTAGTCTCAGAGGTCTGGGAAGAATTGATGGAGAGCTACAGGGATTTAACTGGAACTTCTTGGTCCTATGTGTACTTCATTAGCTTCTACTTAATTACCGTTTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATAGAGCTTGAGTCATCAGAAAATTCTGATGGAAATGACAAGGAAGTTGCAGGAGATAGATATCCGCGGCGACGAACTCTTGGCACAAAATCACGAAGCCAGAGGGTTGACGCTCTTCTTCATCATATGCTGAGTGCTGAGCTGAGTCAAAATCAGCCTTCCAATACATAA 2208 0.3881 MEPLLGGESSGIRNRSRGGRVHRTDAITYGSNYEKAAALIDLAEDGVGIPEQLLESSSFQSYSRYYFMFTKLDLLWSLCYFALIVLNFLEKPLWCEKTTHSCNDREYFFLGQLPYLTAAECIIYEGIILVLLSIHTFWPLSYEGPPIFWKSPINLLKAFCLLVILVDMLAYALYISPVAFNFLPFRIAPYIRVVLFVLNIRELRETVIIVTGMLDTYLNILALGLLFLVFASWIAYVIFEDTIQGKTVFTSYSATLYQMFLLFNTANNPDVWVPAYKSSRWSILFFILFVLIGVYFVTNLILAVVYDSFKSELVKQVSEMDRMRRAMLEKAFNLLDTNNDGYLKKDQCIRLFEEVNKYRTLPKISKEEFELIFDELDDTHDVKINKDEFADICNAIALRFQKEDVNSYFDYLGFYHSSTSKRLKAFVKSTMFGYIVTFVLILNLVAVIIETTLDVEENSAQKAWQVVEFTFGWIYVIEMILKVYSYGFENYWRIGQNRFDFVITVTIAIGETIDFASPDDALPFFTNGEWIRYLLLARMLRLIRLLMYVQRFRSFVATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGLVNAGNPDLEATDLAANDYLLFNFNDYPNGMVTLFNLLVSEVWEELMESYRDLTGTSWSYVYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSENSDGNDKEVAGDRYPRRRTLGTKSRSQRVDALLHHMLSAELSQNQPSNT* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4048 735 Gene3D - 556 706 - -
Tpr7g4048 735 SUPERFAMILY Voltage-gated potassium channels 431 676 - -
Tpr7g4048 735 Pfam EF-hand domain pair 328 392 IPR002048 GO:0005509
Tpr7g4048 735 MobiDBLite consensus disorder prediction 688 712 - -
Tpr7g4048 735 CDD EFh 327 392 IPR002048 GO:0005509
Tpr7g4048 735 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Tpr7g4048 735 Gene3D - 202 309 - -
Tpr7g4048 735 SUPERFAMILY EF-hand 313 396 IPR011992 -
Tpr7g4048 735 Pfam Ion transport protein 430 676 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr7g4048 735 Pfam Ion transport protein 76 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr7g4048 735 SMART efh_1 327 355 IPR002048 GO:0005509
Tpr7g4048 735 SMART efh_1 368 396 IPR002048 GO:0005509
Tpr7g4048 735 Gene3D - 310 393 - -
Tpr7g4048 735 ProSiteProfiles EF-hand calcium-binding domain profile. 323 358 IPR002048 GO:0005509
Tpr7g4048 735 MobiDBLite consensus disorder prediction 688 705 - -
Tpr7g4048 735 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 732 IPR044581 GO:0005245
Tpr7g4048 735 Gene3D - 421 555 IPR027359 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4048 Tpr-Chr7 49649460 49671966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4048 2 735 Ion Channels AT4G03560 66.667 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4048 K16900 - gmx:100806160 1154.43