Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4043 ATGTCGAACCGGGCCGGTGCCAATGCTATAGCAAATTCTGACAAAAAATGTTCTAATGATCTTGATTGCGACATATGCTTGGAGCAAGTGAAAGATCCAGTGGTAACTTTTTGTGGTCATCTCTATTGTTGGTCATGTATATACAAATGGATTAATAGCACATCATGGGAACATAATGTGAAGCCAGAATGTCCAGTTTGCAAAGTAGAAATTTCAGAATCAACAGTTGTTCCATTATATGGTCGTGGCCATACATCATCAACTGCTCAAGGTGAGGTTCAACGAGATGGGAGTGTTGTACCACCAAGACCATCTGGTCCTAGATCATTTCATAGTACTCCAAATGTTTCAGAACAACCTCAGCAAGAACAAATTAATATCAGAGAATGGGTTGCACTTTTTCTTAAAATTTGGCCCATATAG 423 0.3924 MSNRAGANAIANSDKKCSNDLDCDICLEQVKDPVVTFCGHLYCWSCIYKWINSTSWEHNVKPECPVCKVEISESTVVPLYGRGHTSSTAQGEVQRDGSVVPPRPSGPRSFHSTPNVSEQPQQEQINIREWVALFLKIWPI* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4043 140 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Tpr7g4043 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 7 124 - -
Tpr7g4043 140 SUPERFAMILY RING/U-box 10 74 - -
Tpr7g4043 140 SMART ring_2 23 67 IPR001841 -
Tpr7g4043 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 124 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr7g4043 140 MobiDBLite consensus disorder prediction 85 122 - -
Tpr7g4043 140 Pfam Zinc finger, C3HC4 type (RING finger) 23 67 IPR018957 GO:0046872
Tpr7g4043 140 ProSiteProfiles Zinc finger RING-type profile. 23 68 IPR001841 -
Tpr7g4043 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4043 Tpr-Chr7 49597286 49597708 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4043 8 119 C3H Transcription Factor Family AT1G74990 41.071 5.94e-29 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4043 K10666 - gmx:100786373 133.265