Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4041 ATGGCCTTCAATCAGTATTTTGAGGAGGGTGTGGACCGAATTGAGTCCTTGGAAGATAAACCATCTCAGGAAATATGGAAATGTGCAAGTGCTGAAGCAATTTCGGGCTCTAGCGGCTTTGACTGCAACATATGTCTTGAGTGTGTGCAAGATCCGGTTGTCACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCAATGACGAAAATGAAGATAAGCGAAAGGAGAAGCCACAATGTCCAGTATGCAAATCAGAAATTTCAAAGTCATCTCTTGTTCCGCTCTATGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGCTCAACAAGTAAGGAGTGTGATACCACCGAGACCGCTTGGTCCATTACCAAGATCACTTGATGCTGCATCTGTTTCACAACATGCTTCTCAGGTTTATCATCCTCATTATCTTAACCATACTCAACGATACGCTTCACCGATGCTTAACACAAGTGGTTTAATGACCAATCCATTGGATACAACTTATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGTAACCAAGTGACAAACATATATACATACCCAAATTCGTATAATCTTACAGGAATTAGTAATCCAAGGATGAGAAGGCATTTGATGCGAGCAGATAGGTCGCTCGGTAGAATCTGTTTCTTCCTCTTTTGTTGCACAGTTTTGTGTCTTCTCTTATTTTGA 729 0.4225 MAFNQYFEEGVDRIESLEDKPSQEIWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFNDENEDKRKEKPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNAQQVRSVIPPRPLGPLPRSLDAASVSQHASQVYHPHYLNHTQRYASPMLNTSGLMTNPLDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGISNPRMRRHLMRADRSLGRICFFLFCCTVLCLLLF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4041 242 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Tpr7g4041 242 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Tpr7g4041 242 SUPERFAMILY RING/U-box 38 102 - -
Tpr7g4041 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 242 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr7g4041 242 SMART ring_2 42 89 IPR001841 -
Tpr7g4041 242 CDD RING-HC_AtRMA_like 40 91 - -
Tpr7g4041 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 242 - -
Tpr7g4041 242 Pfam Zinc finger, C3HC4 type (RING finger) 42 89 IPR018957 GO:0046872
Tpr7g4041 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4041 Tpr-Chr7 49568004 49570615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4041 24 242 C3H Transcription Factor Family AT4G28270 39.823 3.79e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4041 K10666 - gmx:100785491 310.457