LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g4032	ATGGCTGCAGCTAAGAACAGTGGAAAATTCAATAAAGATTTTGGTGATGAAACTCACAACAATCGTAACAAGGTTATACAAATTGGTGAAAGCCAAGTTAATTGGGAGATTGAAAAAGGAAAAAGTGTTGAATTAAGCTCTTCTCAAAGGTATCATTGGAAGCCCGTTTTTGATGAAGCTTCTATTTCACATAATAGACCTTTCAAGAAAAGTAAAAGCCCTGAACGTGAAAATCAAAATCAAAATCAATTTTCACCTTTTTCTGTTCCTTCTTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCAAGACTTGTTTTTCCTTTTGCTTTTGATAATACTTCACAACAATTTGGTCCCAACAGCAATTTACCTTTTTACCCTTATCCACCACCTACACAAAACCAAAACCAAAACCAGCAACAAATGATATCTTTTGGGTCACAATCACAACAACAACAGAACAATATTGTTTCATATCCACCAATTTTGTCTCAACAACAACAGCAGCAACATCATCAACAGCTTCTTCAATATTGGAGTGATGCATTGAATCTAAGTCCAAGAGGAAGAATGTTGATGATGATGAACAATAACAATAGGTACTTGGGGCAATATGGTAATAATAATGGACCAATGTTTAGGCCTCAAGTTCAACCTATAAGTACTACAAAACTCTATAGAGGAGTTAGACAAAGACATTGGGGAAAATGGGTAGCTGAAATTCGTCTACCTCGAAATAGAACTCGTCTTTGGTTAGGGACATTTGATACCGCCGAAGATGCTGCTTTAGCCTATGATCGCGAGGCGTTCAAGTTAAGAGGAGAAAATGCAAGGCTCAATTTTCCTGAACTTTTTCTCAACAAAGATAAAGATAAAGATAAAGAAAAGGAAAAATCAGCACCTTCATCACCACCTCCAACATCAACAAATGCAGATTCATCTGTTACTTCTTCGACAAGTAACACCGTGACAAAGCAGCCTGAGCCTCCACCGATGCAGACACTTCCAATAGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCAAGTGAAGCTACGGTGAGCGAAGGTGGAGAAGGTGTTTCGCAGTCACAAGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATTCCGGCGGCTTGGGGTCCAGGCAGTCCTGTTTGGGATGATAATCTTTTTTCACAGTCACAAAATCCTTTTTCCAATCTCAACCAACATGAAGAATTCAATGATTTTGATCCTCAGATAGGGTCAGGTTCTTCTTCCATTACGCCTTTCTTTTGGAATCATGATCAAACTTGA	1323	0.3825	MAAAKNSGKFNKDFGDETHNNRNKVIQIGESQVNWEIEKGKSVELSSSQRYHWKPVFDEASISHNRPFKKSKSPERENQNQNQFSPFSVPSSASSSSSSSSSSSSSSRLVFPFAFDNTSQQFGPNSNLPFYPYPPPTQNQNQNQQQMISFGSQSQQQQNNIVSYPPILSQQQQQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNRYLGQYGNNNGPMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDKEKEKSAPSSPPPTSTNADSSVTSSTSNTVTKQPEPPPMQTLPIEESNENDSGIGSSEATVSEGGEGVSQSQELVWSEMSAWFNAIPAAWGPGSPVWDDNLFSQSQNPFSNLNQHEEFNDFDPQIGSGSSSITPFFWNHDQT*	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g4032	440	PRINTS	Ethylene responsive element binding protein signature	231	242	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	PRINTS	Ethylene responsive element binding protein signature	253	269	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	77	91	-	-
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	57	76	-	-
	Tpr7g4032	440	SUPERFAMILY	DNA-binding domain	230	288	IPR016177	GO:0003677
	Tpr7g4032	440	SMART	rav1_2	230	293	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	289	305	-	-
	Tpr7g4032	440	ProSiteProfiles	AP2/ERF domain profile.	230	287	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	289	370	-	-
	Tpr7g4032	440	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	427	-	-
	Tpr7g4032	440	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053	1	427	-	-
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	1	32	-	-
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	306	333	-	-
	Tpr7g4032	440	CDD	AP2	229	289	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	Pfam	AP2 domain	231	279	IPR001471	GO:0003700\|GO:0006355
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	341	370	-	-
	Tpr7g4032	440	Gene3D	AP2/ERF domain	230	288	IPR036955	GO:0003700\|GO:0006355
	Tpr7g4032	440	MobiDBLite	consensus disorder prediction	56	91	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g4032	Tpr-Chr7	49492597	49494905	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g4032	1	430	AP2-EREBP Transcription Factor Family	AT2G20880	38.356	6.94e-66	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Tpr7g4032		AP2	3.2e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g4032	-		-	gmx:100101898	377.096