Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4021 ATGGTAGTAATCGATCACCACGAGACTGACGATCGAAACGCGATTCTCTCCAACGCCACTACAATCGACGACGCTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGACAGCAACGTCGACGCCAATGACGGCAGTGCAATCAAACAGGAAGAACAAGATAATCTTCAGCAACAGAACCAACAGAGTGATCAACAGCAGGAACAGAGTGATACTCAGAGAATCATTTCTTCTGACGATGCATCGATCAACAATGAAGAACTGATACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGCAGAAGGGAACAAACTTTTTGTAGATGCAAGGTATGAGGAGGCATTAACACAATATGAACTTGCTTTGCAAGTTGCACCAGACGCGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGTGTGTGCTTTCTGAAAATGGGAAAATATGAAAACACAGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCCATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCAATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAACCATCCGCCGGCTAGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGTCGCTTTGGGATGAGCGTTGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCCGTCTCATTCCAACAGTAA 810 0.437 MVVIDHHETDDRNAILSNATTIDDASDGFETASDTDLDSNVDANDGSAIKQEEQDNLQQQNQQSDQQQEQSDTQRIISSDDASINNEELIQKALVQANEAKAEGNKLFVDARYEEALTQYELALQVAPDAPSSVEIRSICHANRGVCFLKMGKYENTVKECTKALELNPMYVKALVRRGEANEKLEHFEEAIADMKKILEIDPSNDQAGKTIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4021 269 MobiDBLite consensus disorder prediction 24 82 - -
Tpr7g4021 269 Gene3D Tetratricopeptide repeat domain 52 236 IPR011990 GO:0005515
Tpr7g4021 269 SUPERFAMILY TPR-like 90 208 IPR011990 GO:0005515
Tpr7g4021 269 Pfam Tetratricopeptide repeat 140 170 IPR001440 GO:0005515
Tpr7g4021 269 Coils Coil 178 198 - -
Tpr7g4021 269 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 16 269 - -
Tpr7g4021 269 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 16 269 - -
Tpr7g4021 269 SMART tpr_5 138 171 IPR019734 GO:0005515
Tpr7g4021 269 SMART tpr_5 172 205 IPR019734 GO:0005515
Tpr7g4021 269 SMART tpr_5 97 130 IPR019734 GO:0005515
Tpr7g4021 269 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Tpr7g4021 269 Pfam Tetratricopeptide repeat 173 205 IPR013105 -
Tpr7g4021 269 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Tpr7g4021 269 Coils Coil 49 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4021 Tpr-Chr7 49398048 49402418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4021 84 239 Calmodulin-binding Proteins AT3G25230 35.976 2.51e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4021 K24926 - gmx:100808386 358.221