LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g3976	ATGACAAACATTGTTCTATTTTCACTTAATTTTTTGCTGCTATGCTTTCAACTATGTTCAGCTAGAAATACTTTGAACTTTGGCAACAATATATCTCAACAAGAGAGTCTTGTTTCAATTGGAAAAAAATTTCAACTTGGTTTTTTTTCACCAAATGAAAGTGGTAGCAACACAACTAGTCTTAAGAAATACTTGGGAATATGGTATCGCAATTTGGAAGAAAAAAACACAGTGGTATGGGTAGCCAACAGAAACAAGCCTATTGTCGATTCAGACGGAGTTTTTCAAATTGCTGAGGATGGAAATCTTGTAGTAGCAGATGCATCACAGAGTTATTGGTCCACAGAATTAGCAAAAGTTTCCTCATCAAGAAACAGGTTAGTGAAGCTCTTGGATTCTGGAAACCTAGTACTAATGGATGATGATGGTTACATGTTGTGGCAAAGCTTCCAACATCCAACAGATACATTTCTTCCTGGTATGAAAATGAACATAAATTTAACTTTGAGTTCTTGGAGAAATGAGAATGATCCAGAAAGTGGAAGCTTCGCTTTTGAACAAGCGAAAAAAAGCTATAGAGTAAACAACCATTCACAACTTTACTGGGAATTTGATGGACAAAATTTAGATAAGATGTTTCACATAATTCTTGGCTTGTTGGAGAACACCACCACCTCACATTCCAACTACAGCAAGTTACTAAAGAAAAACATGACACAACAAATTTTTAATTATGATAAATCAAGGTTGGTGATGAATTCTAGTGGTGAGATACAATTTTGGAAGTGGGAGGATAACTTTCAATGGATGAAAATTTGGGGGCAGCCATCGGATATATGCGACATACATAACTATTGTGGTAACTTTAGCAGCTGCAGCAAATATAATTGGATTCCATGTAAGTGTTTGCCAGGATTTCGTAAGTTGTCGGATGATGCTCCTCGTTACCAGCTTGGAGAACGGTTCCAAGGATGTGTTAGAAAATCGCAAACATCGTGTCTCCCAAAGGTCATGGCCACTGCCAACAATGAAATGATATTCATCAACTTAACAAAGATAAAAGTGGGAAATCCAGACATAGGATTGCAATCAGAATCAGAAGCAAATTGTCAATCTATGTGCCTTAACATGTGTTCTGTCTCTCGGTGCAATGCTTATTCGTATAATAATGCTACATATAGTGATCGTAGCAGCATCTTTTCATGTTGGATATGGACACGACAATTGCCTACACTTCAAGAGGATCAAGATGATGGTCGCGATCTTTCAATCCTAGTGAAGAGATCAGATATAGAATCAACTGCAAAATCGTGCGAACCTTGTGGCACATATATAATTCCTTATCCTCTAAGCACCGGGCCAAAATGTGGAGACCCTATGTACAACAAATTCAGTTGTAACTTATTGACAGGCCAGCTTAGTTTCATGTTGTCAGATGGAAAATCATATCGAGTTACCGTTATTGATGAAGGTGGTAGAAAGTTTTATATCCAAACGAATGATACAAATCGTTGTGGTGATTCCAGTTCCAGTAGTTATCAAACTAGTTCACCTTTTAGTGTGATTAATTGGTGTTCTGACAAAGATGAAATAGAGCTCGATTGGGCACCGGCTCCCGAACCACATTGTGATAAATATGTTGAATGCATAAATTGGCCCCATTCCACATGCATTGCAAAAAATGGAGGAGAAACAAGGTGCTATTGTGATTCAAAATATTTGTGGAACGCCTCAAGTTTAACTTGTACCCGAGAATCATCAAGAAACCATTCAACAAATCGAATGCGATTGATTCTACCAGTAATTTGTATAGTCATCATTATCCTAACATGTACAATGGTGTTTGCTTATGTACGGAGAAAGAAAATAGGCCACAAGCTCGATAAGGTGAGCATTCAAATTCAGGAGAGTTTGTACAACAGTGAAAAACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAATGATGGTGAAAGCATTGAAGTACCTTATTATACTTTTAGAAGCATTCAATTAGCTACAAATAATTTTTCAGATTCAAACAAGCTTGGACAAGGAGGTTATGGCCCTGTCCATAAGGGAAGGTTTCCTGGAGGCCAAGATATTGCTATAAAGAGGCTTTCAAGCGTTTCAACTCAAGGCTTACACGAATTTAAAAATGAGGTTGTTTTGATTGCGAAACTTCAACATCGAAATCTTGTTAGGCTTAGGGGCTATTGTGTTAAAGGAGCCGAAAAAATCCTACTATATGAATACATGTCAAACAAGAGCCTGGACACATTTATATTTGATCGAACAAGAACTGTACTTTTGGATTGGAAATTGCGGTTTGACATTATTATAGGCATTGCCCGAGGGATGCTTTATCTCCATCAAGACTCAAGATTGAGAGTGATTCATAGAGACCTTAAAACAAGCAACATTCTTTTAGACGAGGAGATGATTCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGCGGAAAAGAGACTGAAGCAAGCACACAAAGAGTAATGGGAACCTACGGATATATGGCTCCAGAATATGCCTTGGATGGATTCTTTTCAATCAAATCAGATGTTTTTAGCTTTGGTATAGTCCTACTAGAGATTCTCAGTGGTAAAAAGAACACGGGATTCTTTCGGTCCCAACAAATTTCTAGCCTTTTGGGTTATGCATGGAGATTATGGACAGAGAATAAGTTGCTGGATTTAATGGACTCTGCTATTAGTGAAACTTGCAATAAGAATGAATTCATTAAGTGTGCACATATTGGGCTCTTATGTGTACAAGATGAACCAGGTGATCGACCTACCATGTCAAATATTTTGACAATGCTTGACAGTGAAACTTCAATCATCCCAATTCCAACACAACCAACCTTTTTTATGACCAAACAACAATCATCTAGTTCTTCTTCTAGCAAACTAGAAATCAATATGCAATTTGATACTAGTTATCAACAAGGTCGCTAG	2985	0.3732	MTNIVLFSLNFLLLCFQLCSARNTLNFGNNISQQESLVSIGKKFQLGFFSPNESGSNTTSLKKYLGIWYRNLEEKNTVVWVANRNKPIVDSDGVFQIAEDGNLVVADASQSYWSTELAKVSSSRNRLVKLLDSGNLVLMDDDGYMLWQSFQHPTDTFLPGMKMNINLTLSSWRNENDPESGSFAFEQAKKSYRVNNHSQLYWEFDGQNLDKMFHIILGLLENTTTSHSNYSKLLKKNMTQQIFNYDKSRLVMNSSGEIQFWKWEDNFQWMKIWGQPSDICDIHNYCGNFSSCSKYNWIPCKCLPGFRKLSDDAPRYQLGERFQGCVRKSQTSCLPKVMATANNEMIFINLTKIKVGNPDIGLQSESEANCQSMCLNMCSVSRCNAYSYNNATYSDRSSIFSCWIWTRQLPTLQEDQDDGRDLSILVKRSDIESTAKSCEPCGTYIIPYPLSTGPKCGDPMYNKFSCNLLTGQLSFMLSDGKSYRVTVIDEGGRKFYIQTNDTNRCGDSSSSSYQTSSPFSVINWCSDKDEIELDWAPAPEPHCDKYVECINWPHSTCIAKNGGETRCYCDSKYLWNASSLTCTRESSRNHSTNRMRLILPVICIVIIILTCTMVFAYVRRKKIGHKLDKVSIQIQESLYNSEKHVKGLIGLGSLEENDGESIEVPYYTFRSIQLATNNFSDSNKLGQGGYGPVHKGRFPGGQDIAIKRLSSVSTQGLHEFKNEVVLIAKLQHRNLVRLRGYCVKGAEKILLYEYMSNKSLDTFIFDRTRTVLLDWKLRFDIIIGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMIPKISDFGLAKIFGGKETEASTQRVMGTYGYMAPEYALDGFFSIKSDVFSFGIVLLEILSGKKNTGFFRSQQISSLLGYAWRLWTENKLLDLMDSAISETCNKNEFIKCAHIGLLCVQDEPGDRPTMSNILTMLDSETSIIPIPTQPTFFMTKQQSSSSSSSKLEINMQFDTSYQQGR*	995

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g3976	994	SMART	blect_4	28	153	IPR001480	-
	Tpr7g3976	994	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	800	812	IPR008271	GO:0004672\|GO:0006468
	Tpr7g3976	994	Pfam	Protein tyrosine and serine/threonine kinase	682	949	IPR001245	GO:0004672\|GO:0006468
	Tpr7g3976	994	Gene3D	Transferase(Phosphotransferase) domain 1	755	957	-	-
	Tpr7g3976	994	CDD	STKc_IRAK	685	951	-	-
	Tpr7g3976	994	SMART	ntp_6	342	426	IPR003609	-
	Tpr7g3976	994	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	15	992	-	-
	Tpr7g3976	994	SUPERFAMILY	Protein kinase-like (PK-like)	661	981	IPR011009	-
	Tpr7g3976	994	SMART	serkin_6	679	957	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g3976	994	Gene3D	Phosphorylase Kinase; domain 1	653	754	-	-
	Tpr7g3976	994	CDD	B_lectin	29	153	IPR001480	-
	Tpr7g3976	994	SUPERFAMILY	alpha-D-mannose-specific plant lectins	78	178	IPR036426	-
	Tpr7g3976	994	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	15	992	-	-
	Tpr7g3976	994	Pfam	D-mannose binding lectin	77	168	IPR001480	-
	Tpr7g3976	994	ProSiteProfiles	Protein kinase domain profile.	679	965	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g3976	994	Pfam	S-locus glycoprotein domain	236	308	IPR000858	GO:0048544
	Tpr7g3976	994	ProSiteProfiles	Bulb-type lectin domain profile.	22	151	IPR001480	-
	Tpr7g3976	994	Gene3D	-	17	151	IPR036426	-
	Tpr7g3976	994	ProSiteProfiles	PAN/Apple domain profile.	333	429	IPR003609	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g3976	Tpr-Chr7	49027023	49031041	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g3976	669	967	Receptor kinase-like Gene Family	AT4G23140	57.705	3.44e-123	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr7g3976		PK_Tyr_Ser-Thr	2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g3976	-		-	gmx:100807185	1210.28