Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3961 ATGGACATGGATTCCACAGGTGGTTCTTCTTGTTGGCTTTATGATTATGGCTATGATATTTCTGTTGCTGCAGCTGATTTCATGGCTTCTGATCACTCTGCCGCTTCTGTTTTCACTTGGAATATTCCTCAGTCTCAGTCTCAACCTCAGACTCATATCATCAAGCCTCCTTCATCCAATATCAGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTGGCTCCAAGGCATGTCGCGAGAAATTGCGCAGGGATAAACTGAATGACAAGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCTGCCCAAAACAGACAAAGTTACCTTATTAAATGATGCGGTTCGTGTGGTTACACAATTAAGAAATGAAGCTGAGAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACATTCCAGCTTCCTCTCTAATGCCATGGCTGTTAAAGGACAAACTGCTAGTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA 738 0.4201 MDMDSTGGSSCWLYDYGYDISVAAADFMASDHSAASVFTWNIPQSQSQPQTHIIKPPSSNISLEMEYSLDSTVLENGPSKRLRTESYASGSKACREKLRRDKLNDKFMELSSVLEPDTLLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVHSSFLSNAMAVKGQTASANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3961 245 Pfam Helix-loop-helix DNA-binding domain 91 139 IPR011598 GO:0046983
Tpr7g3961 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 139 IPR011598 GO:0046983
Tpr7g3961 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 155 IPR036638 GO:0046983
Tpr7g3961 245 Gene3D - 91 169 IPR036638 GO:0046983
Tpr7g3961 245 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 245 - -
Tpr7g3961 245 Coils Coil 129 184 - -
Tpr7g3961 245 CDD bHLH_AtILR3_like 92 168 - -
Tpr7g3961 245 SMART finulus 93 145 IPR011598 GO:0046983
Tpr7g3961 245 PANTHER BHLH TRANSCRIPTION FACTOR 1 245 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3961 Tpr-Chr7 48883469 48886068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3961 75 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.989 2.41e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g3961 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3961 - - mtr:MTR_2g089000 362.844