Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3954 ATGGAAGCTCTATGTGAGTTTTGTCGGGTTGTAAGAGCTATGGTTTACTGCAAGCCAGATTCTGCTCGTCTTTGCTTCCATTGCGATGGGATTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATCCCCGCTCACTCCTCTGTGATAAGTGTCATTTCGACTCAGCAATCGTGCGCTGCGTCGAAAATAAACTATCTCTTTGTCAAGTTTGTGATTGGAATACAAATGACTGTTTTGTATTGGGACATAAACATGTGCTACTCACTTTCTATACTGGTTGTCCCTCTTTGGCAGAGTTAACTAAAATTTGGCCACATTTGGTTGATGCAAATTCATCAAATGCTTCTTGGGAATCGCCAAGTACTAGTACTTTGCCTAAAATTGAAAGCAATACCGGTTGTGATCAGCATTTGGAGCAGCAACCTGAAAAGATTGGCTTCGTTGGTTTAGCGAACGAGAAGCTGGATGAAGAACAACCGTGTGTCAAATATGAACCTTGGATTGAGAAATCTCCTATCCTTCAATCAAATTCAAACTGCACACAATACTGCAAAGATCAAGCATTTTCATTTAATCAAGACTCAAACCAACCAAAGCTTCAAGGATGCCTTGATGTCAAGGATCTTGTAATTCATGAGGGGACTAGTCTCTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAAATGCTGATGAAATATTTGACTGCTCTCAAAGTGCCACAAAATTCAACCATGAAGATGGAGGAATAGAATGTCTATTAATGGATAAAAACATTCCAGTCACAAAATGTAGCAGTCTCATTGGGACTGCAGTAGAGGCTTCTTCATCAGTTCAACAAGATTGTGTGATTTTTCCATCATCAGGGGCTGGTGGATCAACAAGTGCGATGCAGGCCATCAACAATAATACAAATTGTGCACTTATGACTCCTAGCTGCAACAGAAGCATGCCTCTAGGATTTCCTCAGAGTCAAATTCATTCAGGCATACCAATTCAATTACCTAACATTAATGGTGAAAGCAATGTTACAGAACTTCTAGATTGTAGTTTACCTCCAGTCTTTCATCCTGGTGAATCCACATGGGAATCAAATTTGGAGGGTACATGCCCTCAAGCAAGGGATAAAGCCAAAATGAGATACCAAGAGAAAAAGAAAACCCGAACGTTTGGTAAGCAAATAAGATATGCGTCTCGCAAAGCTAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGCGAAGCATATGATTATGATCCTAAATTGAGTGACATCTAA 1299 0.4018 MEALCEFCRVVRAMVYCKPDSARLCFHCDGIVHSANSLSRRHPRSLLCDKCHFDSAIVRCVENKLSLCQVCDWNTNDCFVLGHKHVLLTFYTGCPSLAELTKIWPHLVDANSSNASWESPSTSTLPKIESNTGCDQHLEQQPEKIGFVGLANEKLDEEQPCVKYEPWIEKSPILQSNSNCTQYCKDQAFSFNQDSNQPKLQGCLDVKDLVIHEGTSLCEGLNVDDVQLNFENADEIFDCSQSATKFNHEDGGIECLLMDKNIPVTKCSSLIGTAVEASSSVQQDCVIFPSSGAGGSTSAMQAINNNTNCALMTPSCNRSMPLGFPQSQIHSGIPIQLPNINGESNVTELLDCSLPPVFHPGESTWESNLEGTCPQARDKAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPKLSDI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3954 432 CDD Bbox1_BBX-like 4 47 - -
Tpr7g3954 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 428 - -
Tpr7g3954 432 Pfam CCT motif 377 419 IPR010402 GO:0005515
Tpr7g3954 432 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr7g3954 432 ProSiteProfiles CCT domain profile. 377 419 IPR010402 GO:0005515
Tpr7g3954 432 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 428 - -
Tpr7g3954 432 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3954 Tpr-Chr7 48853609 48857949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3954 1 427 C2C2-CO-like Transcription Factor Family AT3G21880 38.391 1.13e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr7g3954 CCT 1.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3954 - - mtr:MTR_2g088900 765.763