Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3950 ATGGAACCAATTTGCTCTATTACATCGGCTTGTGCCACTCAAATCTCTGCACTTCTTGCTCCTCCCTCACCTAACCAAATTCAGGAATATTATCACAACATTTTCTCTTCAACGCACTGCAATAGCATCACTGTCAAACAAGATGACAACTTTGGAAAAGGTCTCTATGCTGCAACGGACTTCAAAGAGGATGAACTTGTTCTCAAGGACCAAATGCTTGTTGGGGCTCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATCAGTTCCATAGAAACTCAAATTGGTAGGAGGCTTTACTTGACACAATTAAGGGCCAATGAGAGTCATGATTGTGATGAAGGAAGCTCTTCAAAGTCTTCGAAAAACTATCATCAAATGGATTCATCTGATGAAGAGGAGAGCACTTGGCAATGCAGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTGTCGAATCATTGATGAATGGCCAATTGAAATTGCCTTACTCTGAGAAGTTCTCCTTGCCTCCAGCTGTTCCGTGCCATGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGCGAGAGTTGTGATCCAAGACGTAGGGAGGCACTACTTAAATTCGTGAAACACGCTAATGAAACAAATGATATATTTCTCCTTGCTGCAAAGGTCATTTCTTCTACCATATTAAGGTACCGCAAGTTAAAAGCAAATTGTCTTGCAGAGAAAGGGAAAAATGTGGCATCCTGTGTTCCAGACCACCCTAATTTCTCCCTTCTTTTGGAAGCTTGGAGGCCTATAACAATGGGATACAAAAAAAGGTGGTGGGACTGCATTGCATTACCAGATGATATTGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATAAAAGAGTTGGCATTCGAGTCTCTCCAACTTCTTCAGACAGCAATATTTGAAAAGGAATGTGAGCCGTTATTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCCTTGGAGGATTACTTTTTATACATCGATGATATGAAGAATCCTGACAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGTTTATTCTACTAGTTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGTATGAATCATTCATGTTGTCCTAATGCCAAAGCTTTCAAAAGAGACGAGGATAGAGATGGTCAAGCAACAATAATTGCACTGAGGCCCATCTGTAAGGGAGAAGAGATAACAATTTCATATGTTGATGAAGACCTTTCATTTGAGGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAAATGCATTGAAGAAGAACCATAA 1464 0.4071 MEPICSITSACATQISALLAPPSPNQIQEYYHNIFSSTHCNSITVKQDDNFGKGLYAATDFKEDELVLKDQMLVGAQHSFNKIDCFVCSFCFRFISSIETQIGRRLYLTQLRANESHDCDEGSSSKSSKNYHQMDSSDEEESTWQCSSGSSKTKVPLPEGVVESLMNGQLKLPYSEKFSLPPAVPCHGGCGEAYYCSMSCAEADWESSHSLLCTGESCDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYRKLKANCLAEKGKNVASCVPDHPNFSLLLEAWRPITMGYKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLQTAIFEKECEPLFSLEIYGHIIGMFELNNLDLVVASPLEDYFLYIDDMKNPDKEEAEKITQPILDALGEVYSTSCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRPICKGEEITISYVDEDLSFEERQASLADYGFRCRCPKCIEEEP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3950 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Tpr7g3950 487 CDD SET_SMYD 396 482 - -
Tpr7g3950 487 Pfam MYND finger 185 213 IPR002893 -
Tpr7g3950 487 SUPERFAMILY SET domain 40 480 IPR046341 -
Tpr7g3950 487 Gene3D - 124 217 - -
Tpr7g3950 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Tpr7g3950 487 SMART set_7 41 463 IPR001214 GO:0005515
Tpr7g3950 487 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
Tpr7g3950 487 Gene3D SET domain 380 486 IPR046341 -
Tpr7g3950 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3950 Tpr-Chr7 48827938 48833213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr7g3950 SET 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3950 - - gmx:100803651 801.586