Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3946 ATGAGAATTATTATTACCATAAGAAGTACCCAATTTTTCATGGAAGTGGGTACCGTAGAAAAGGTTGTTGAAATCAAAAGGAAAATAGAACAAATCTATGGTGTTCCAATGGCTCACCAAATCCTAACAGTTTCTGGATGGGAACTGATGGATGGATTAGACATGGAAGATTACCCAATTATCACTGAAGGCACAAAAGTTGATCTTGCCATCAAGCCAGTGGAGCCAAATTCCATTAGCTATAATGACAAAATGAAAATGCAGATCACAGTGAAGTTTCCAGCTAGACAGATTAACATAGAGGTGGACCAGACAGATACTGTCCGTAGCTTGAAGGAAAAAATTCACATCATTGAGAGCATCCCGATCAAAAAAATGACACTTTTCTTTCTGGGGAGGGAACTGAATGATGATTTTCGAAACCTAAATGAATATGGTATTCGTGAGTTTTCTGAAGTTATTGCGTTCCTCAAGAACGCACATCAGCCAAAAGATCCACCAAGTAAGAAGCTGAGTTTGGTGGTACAAACATCCTCTAGTTTGCTTAATGCTGCCACCATTCCATTGGAGATGAGAGATGCAAACACTGTTAATGACTTGAAGCAGTTCCTGCTAAGCAGAAAAATTCTGCCAGCTGATGATTATTTGTTTATTCACAGGCAGAGGATCATGCGTGATAGTTGTAGCCTTAAGTGGCATGGAGTTGAAAATGGAGACTGTCTCTACGTGTTTAAAGGGACGGTTAGCCGCAATGGGTACGCCACATCTTGA 771 0.4021 MRIIITIRSTQFFMEVGTVEKVVEIKRKIEQIYGVPMAHQILTVSGWELMDGLDMEDYPIITEGTKVDLAIKPVEPNSISYNDKMKMQITVKFPARQINIEVDQTDTVRSLKEKIHIIESIPIKKMTLFFLGRELNDDFRNLNEYGIREFSEVIAFLKNAHQPKDPPSKKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKQFLLSRKILPADDYLFIHRQRIMRDSCSLKWHGVENGDCLYVFKGTVSRNGYATS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3946 256 Pfam Ubiquitin family 89 158 IPR000626 GO:0005515
Tpr7g3946 256 Pfam Ubiquitin family 6 73 IPR000626 GO:0005515
Tpr7g3946 256 Gene3D - 86 158 - -
Tpr7g3946 256 ProSiteProfiles Ubiquitin domain profile. 171 243 IPR000626 GO:0005515
Tpr7g3946 256 CDD Ubl_ubiquitin_like 186 244 - -
Tpr7g3946 256 Gene3D - 159 249 - -
Tpr7g3946 256 SUPERFAMILY Ubiquitin-like 1 73 IPR029071 -
Tpr7g3946 256 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 252 - -
Tpr7g3946 256 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 252 - -
Tpr7g3946 256 ProSiteProfiles Ubiquitin domain profile. 3 60 IPR000626 GO:0005515
Tpr7g3946 256 SUPERFAMILY Ubiquitin-like 82 168 IPR029071 -
Tpr7g3946 256 CDD Ubl_ubiquitin_like 89 153 - -
Tpr7g3946 256 Gene3D - 1 69 - -
Tpr7g3946 256 SUPERFAMILY Ubiquitin-like 162 244 IPR029071 -
Tpr7g3946 256 ProSiteProfiles Ubiquitin domain profile. 87 158 IPR000626 GO:0005515
Tpr7g3946 256 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr7g3946 256 SMART ubq_7 87 158 IPR000626 GO:0005515
Tpr7g3946 256 SMART ubq_7 171 246 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3946 Tpr-Chr7 48788375 48789261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3946 87 158 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 5.28e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3946 - - lang:109342690 387.497