Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3944 ATGGCCAATGTGGATCGCTCCTTTGAAGAAGTTTCAGCTAATACTTCTACAGAGAAATCCAATTCTAGTCAATCTTCCAAGGTTGAATTCTCTGAAGATGAGGAAGATCTTATCATCAGAATGCATAAACTAGTGGGGGATAGGTGGCCTTTAATTTCTGGGAGACTTCCTGGAAGAACAGCTGAAGAAATAAAGAATTACTGGACTTCAAGATACTCATCAAGTAGCCAATGA 234 0.3932 MANVDRSFEEVSANTSTEKSNSSQSSKVEFSEDEEDLIIRMHKLVGDRWPLISGRLPGRTAEEIKNYWTSRYSSSSQ* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3944 77 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Tpr7g3944 77 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 14 75 - -
Tpr7g3944 77 SUPERFAMILY Homeodomain-like 28 72 IPR009057 -
Tpr7g3944 77 MobiDBLite consensus disorder prediction 1 32 - -
Tpr7g3944 77 CDD SANT 29 68 IPR001005 -
Tpr7g3944 77 Gene3D - 29 71 - -
Tpr7g3944 77 MobiDBLite consensus disorder prediction 8 27 - -
Tpr7g3944 77 SMART sant 26 74 IPR001005 -
Tpr7g3944 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 76 IPR017930 -
Tpr7g3944 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 14 75 - -
Tpr7g3944 77 Pfam Myb-like DNA-binding domain 27 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3944 Tpr-Chr7 48779218 48781469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3944 30 73 MYB Transcription Factor Family AT5G14750 61.364 2.97e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr7g3944 Myb_DNA-binding 7.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3944 - - mtr:MTR_2g088730 107.457