Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3943 ATGAACGACCTTCTTACTGATTCATTTGTTGGTGAGGCTACTAATGGACAACCTTCTAGACAAGGTGATATTGAAATGGGAATGCAGGTTCAAAGAAGTAACTCTGATTTGGGGATGGAAACTTTTAATAAACAGATCCAAGATGCTGATAAACAAATTGAGAAGCTGTCCGCGCTCCTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGAATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAGCGAAAATAGAAGCTATCAACAGAGAAAATCTAAATAATAGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAATATGACTAATGCCTTGACCAAAAAGTTCAGGGATCTTATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACCGGAACTAGACCAGATGATCAGACGATTGACCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAAGCAATTCTTGAATCAGGCCGAGGACAGGTTGTAAGCACGGTAGAAGAAATTCAGGAGAGACATGATGCAGTGAGAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGCCAGGTGGCAAACGCAACTGATCATGTGAAATCGGGTAACGACGCTCTCCATACTGCAAAGAGTTTGCAAAAGAAATCAAGGAAATGCATGATGATTGCTGTTATATTGATCCTGCTCATTGCCATCTTTATAGTACTTGCTGTTTTGAAACCATGGAAGAAAGAGAAGTAA 927 0.3948 MNDLLTDSFVGEATNGQPSRQGDIEMGMQVQRSNSDLGMETFNKQIQDADKQIEKLSALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNALTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDQTIDHLIETGNSEQIFQKAILESGRGQVVSTVEEIQERHDAVREIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVANATDHVKSGNDALHTAKSLQKKSRKCMMIAVILILLIAIFIVLAVLKPWKKEK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3943 308 MobiDBLite consensus disorder prediction 1 25 - -
Tpr7g3943 308 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Tpr7g3943 308 Pfam SNARE domain 245 297 IPR000727 -
Tpr7g3943 308 CDD SNARE_syntaxin1-like 208 268 - -
Tpr7g3943 308 Gene3D - 203 302 - -
Tpr7g3943 308 SMART SynN_4 34 160 IPR006011 GO:0016020
Tpr7g3943 308 Coils Coil 39 76 - -
Tpr7g3943 308 PANTHER SYNTAXIN 10 300 IPR045242 -
Tpr7g3943 308 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
Tpr7g3943 308 Gene3D - 34 163 - -
Tpr7g3943 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Tpr7g3943 308 CDD SynN 39 196 IPR006011 GO:0016020
Tpr7g3943 308 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 300 - -
Tpr7g3943 308 SMART tSNARE_6 204 271 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3943 Tpr-Chr7 48766188 48772853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3943 1 304 SNARE and Associated Proteins AT3G03800 61.184 8.52e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3943 K08486 - gmx:100800991 499.59