Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3934 ATGAAGCAGTTCATGGTTTTGTATCTTATGATTTGGATTTGGGTAATTTTCTTTTCTGGTATTGTTTATAGTGAAAAGCCTGAAAGTGTGAATATTGGAGCAGTTTTCACTTTTGATTCTGTCATAGGTAGAGTTGCAAAAGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAACAATTCTTAATGAGACTAAGCTCAACTTGATAATGAAAGATGGTATGTGTAATGCTTTTCTGGGATCAACTGGAGCTTTTCTGGTACTTGAGCAAGGGGTTGCAGCCATAATTGGGCCACAGTCATCAGCCATAGCTCATTCGATTTCTCAAATAGCCGATGCTGTCAAAGTTCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTTCGCACCGTACAAAGTGACTCAGAGCAAATGGTTGCAATGGCCAATTTAATTGACTTTAATGGATGGAAAGAAGTCATTGTTGTCTTCTTGGATGACGACTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTCGAAAATAGGAGATTGAAAATAGCTCACAAACTAGCTTTGAGTATTCATTTCGACCTAGATGAAATCACTAAGTTGCTCAATCAAACCAAAGTGTTTAACCCTCGTGTTTTTGTTGTTCATATCAATCCTGATCCTAGATTGAGGATTTTTTCCATTGCTCACAAACTTCAAATGATGACTAGTGAATATGTTTGGCTTGTCACAGATTGGCTCGCTGCTACCCTACATTCATTTTCGCCAGCGAATCAGAAATCTCTTAGCGTTGTCGAAGGAGTTGTTGGTCTTCGTCAACACATCCCGGATTCTAGAAAAAAAAGAGATTTTGTTTTTCGATGGAAAAAAATGCAAAAAGAAGGTGTAGCTAATACTAGTTTGAATTCCTATGGATTTTTTGCTTACGATACAGTTTGGGCAGTTGCACATTCAATTGATAAATTTCTGAAAGTGCATGACAATATTACCTTTTCGCTTCGTGACAACAATATGGTACCTCATACAGAAGGAATCGGTATTCAGCTTGAGAAGCTCAAAATCTTTGCCAATGGATCTGATTTTGTTAACATATTATCACTATCAAATTTTAGCGGCGTGAGTGGTCAAATTCAGTTTAGTTCAGACAGAAATGTCATTAGTAGTGGTTATGATGTTATCAATATCAATCAGATGAAAATTAAGAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCAGTTGTTCCCCCCGAAGTTCTTGCGAAGAAGAAACATCCAAGGGTTTCCGTAGATCAGAAGCTTGAAAATATTACTTGGCTAGGTGGGAAAACAGAAAGACCGCGCGGCTGGGTGATTGCGGATAATGCAAAGCCATTGAGAATTGGAGTGCCAAGGAGAGCGAGTTTCGTTGAATTTGTAACTGAACTGCAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCATATGAAATTCCTTTTGTATTTAAGCCTGTTGGGAATGGTAAAGCAAATCCAAATTATGATGCACTCGTCAAAAAAATTGACCAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACGAACCGAACAAAGATTGCGGACTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCCTGGGTATTCCTCAAACCATTCTCAGCAGATATGTGGTGTATCATTGGTGCATCATTTCTCATGATTGGAGTTGTTATATGGATTCTTGAACACCGAGTCAACGATGAATTCCGTGGTCCTCCTAAGAGACAAGTTGTCACAATATTTATGTTCAGTCTCTCAACACTTTTTAAGACAAATAATAATACCGTAAGCTCGCTTTCTAAAATGGTCTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACGTCAATTCTCACAGTGGAACAACTTTCATCGCCGATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCGTTCGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAAATCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATATGCGGTAGCACTTCGGAATGGTCCGTCTGGTGGTGGCGTAGCAGCTATCGTCGATGAGCTTCCGTATGTTGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGCAGTTGGGGATTCGCTTTTCAAAGAGACTCGCCTCTTGCACTTGACATGTCAACTGCAATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACACGAGAGATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGCAACCCTAAACCAGACCAACTTCATCTGATCAGCTTTTGGGGTCTATATCTCTCGTGCGCTGTCATCTCTGTTGTGGCACTTGTTTTGTTTCTGCTGCGAATGATTAGCCAATATGTTGGCTTCAAACAAAGGCAAAAGGACATTGTTGCACCATCCTCGGAACAATCTAAAAGTCATTGTTCCCGGGTTGTTGTTAACTTCTTTAACTTCATCGATGAAAAGGAAGAAGCTATCAAGAAAATGTTTACTCAATGTGACAATCCTCATAACCCCCCCACCTGA 2739 0.3969 MKQFMVLYLMIWIWVIFFSGIVYSEKPESVNIGAVFTFDSVIGRVAKAAMEMAVSDVNSDPTILNETKLNLIMKDGMCNAFLGSTGAFLVLEQGVAAIIGPQSSAIAHSISQIADAVKVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMVAMANLIDFNGWKEVIVVFLDDDYGRNGVSALSDELENRRLKIAHKLALSIHFDLDEITKLLNQTKVFNPRVFVVHINPDPRLRIFSIAHKLQMMTSEYVWLVTDWLAATLHSFSPANQKSLSVVEGVVGLRQHIPDSRKKRDFVFRWKKMQKEGVANTSLNSYGFFAYDTVWAVAHSIDKFLKVHDNITFSLRDNNMVPHTEGIGIQLEKLKIFANGSDFVNILSLSNFSGVSGQIQFSSDRNVISSGYDVININQMKIKRVGYWSNHSGFSVVPPEVLAKKKHPRVSVDQKLENITWLGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELQDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKANPNYDALVKKIDQNVYDAVVGDIAIVTNRTKIADFSQPFASSSLVIVAPINSSKSNAWVFLKPFSADMWCIIGASFLMIGVVIWILEHRVNDEFRGPPKRQVVTIFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSKSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHERWFCKMGCPGERKSNPKPDQLHLISFWGLYLSCAVISVVALVLFLLRMISQYVGFKQRQKDIVAPSSEQSKSHCSRVVVNFFNFIDEKEEAIKKMFTQCDNPHNPPT* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3934 912 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Tpr7g3934 912 SUPERFAMILY Periplasmic binding protein-like II 448 808 - -
Tpr7g3934 912 CDD PBP1_GABAb_receptor_plant 31 426 IPR044440 -
Tpr7g3934 912 Pfam Bacterial extracellular solute-binding proteins, family 3 485 808 IPR001638 -
Tpr7g3934 912 Pfam Receptor family ligand binding region 47 406 IPR001828 -
Tpr7g3934 912 Gene3D - 48 397 - -
Tpr7g3934 912 PIRSF IGluLR_plant 1 910 IPR017103 -
Tpr7g3934 912 CDD GluR_Plant 467 808 - -
Tpr7g3934 912 Gene3D - 739 773 - -
Tpr7g3934 912 Gene3D - 580 709 - -
Tpr7g3934 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Tpr7g3934 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Tpr7g3934 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Tpr7g3934 912 PANTHER GLUTAMATE RECEPTOR 3.7 12 909 - -
Tpr7g3934 912 SUPERFAMILY Periplasmic binding protein-like I 26 460 IPR028082 -
Tpr7g3934 912 Gene3D - 145 422 - -
Tpr7g3934 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 909 - -
Tpr7g3934 912 SMART GluR_14 470 810 IPR001320 GO:0015276|GO:0016020
Tpr7g3934 912 Gene3D - 460 579 - -
Tpr7g3934 912 Gene3D - 774 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3934 Tpr-Chr7 48654937 48660414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3934 25 912 Ion Channels AT2G32400 55.034 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3934 K05387 - gmx:100796389 1444.87