Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3890 ATGGATGAAATTCATGTTCCTTCTCATTTTCTTTGCCCAATTTCCCTCCAACTTATGAAAGATCCTGTTACTCTTTCCACAGGAATTAGCTACGACAGAGAAAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACTTGTCCTGTTACAAAATCATCTTTATTAGAAACCGATCTTAATAATCTTACACCAAACCACACTCTTCGTCGTTTAATTCAATCTTGGTGTACCCTTAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAATAGACAGAACACAAATTCTTAAACTCATCAATGAAACAAAGATATTCCCAGAAAAACAACATAGTTGTCTTGTTAAGCTTCGTTCGATCGTCTTCGAAAGCGAAAGGAATAAAAAATGTTTGGAATCAGCAGGTGCAATAGAGTTTTTAGCTTTAACAATGAAGAACAATTCAAATTCAAGTTCTTTGAGTGAAGCTGCTATTGAAATTCTGTTTCATCTTAACCCTTCTGAAGTTCATATCAAGAGTTTGATAAACAATGAAAGCATTCAATTTATTGAATCATTGTTTCATGTTTTGAAGCATGGAAGCTATCAATCTAGAGGCTATGCAACAATGCTATTGAAATCGGCGTTTGAAGTATCGGATCCGATTCACTTAATCAGCGTAAAAAAAGTGCTTTTCGAAGAATTAATGAGAGTACTAATTGATAAGATTTCACAACAAGCTTCAAAAGCAGCATTGAAGTTAATTGTGGAGCTTTTACCGTGGGGGCGAAACCGAATTAAAGCGGTTGAAGGTGGCGCGGTTTTAGTCCTCATTGAGCTTCTTTTCGATGTTTCGGAAAGAAGGGCGTGCGAATTGATTTTGACAGGTTTGGATCAACTATGTGGTTGCGCCGAAGGGCGTGCGGAGTTGTTGAATCATGGTGCAGGTATTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGAGTTAGAATTTTGAGTTCAATTTGTAGATATTCAGCAAATTCTAGAGTTTTACATGAAATGTTGCTAGTTGGAGCTGTTTCAAAGTTGTGTTTGGTTCTTCAAGTTGATAGCAATTTTAAGACTAAAGAAAAAGCTAAGGAGATTCTCAAATTGCATTCTTCTGTTTGGAAAATTTCTACATGTATTCCTGTTCCTTTGTTATCTTCTTATCCATGA 1212 0.3564 MDEIHVPSHFLCPISLQLMKDPVTLSTGISYDRENIEKWLFSFQNKTCPVTKSSLLETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLINETKIFPEKQHSCLVKLRSIVFESERNKKCLESAGAIEFLALTMKNNSNSSSLSEAAIEILFHLNPSEVHIKSLINNESIQFIESLFHVLKHGSYQSRGYATMLLKSAFEVSDPIHLISVKKVLFEELMRVLIDKISQQASKAALKLIVELLPWGRNRIKAVEGGAVLVLIELLFDVSERRACELILTGLDQLCGCAEGRAELLNHGAGIAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLLVGAVSKLCLVLQVDSNFKTKEKAKEILKLHSSVWKISTCIPVPLLSSYP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3890 403 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Tpr7g3890 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Tpr7g3890 403 SUPERFAMILY ARM repeat 102 382 IPR016024 -
Tpr7g3890 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Tpr7g3890 403 Gene3D - 98 387 IPR011989 -
Tpr7g3890 403 CDD RING-Ubox_PUB 10 52 IPR045210 -
Tpr7g3890 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Tpr7g3890 403 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Tpr7g3890 403 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Tpr7g3890 403 SUPERFAMILY RING/U-box 4 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3890 Tpr-Chr7 48120992 48123086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3890 2 403 U-box Gene Family AT2G35930 54.926 2.40e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3890 - - gmx:100778012 617.076