Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3889 ATGGAAGAAAATGAAATTCCTCAATTTTTTCTTTGTCCCATTTCACTTCAAATCATGAAGGATCCTGTGACAACAATTACAGGCATAACATACAACAGAGAAAGCATTGAACAATGGTTACTAACATCAAAAAGTTGCACATGTCCAATTACCAAACAACCCTTACCTAGAAGCTCAGAGTTTTTGACACCAAACCACATTCTTCAAAGATTAATTCAATCATGGCACTTACAAAATTCATCTATTAGCGTTGAAAAGATTCCAACTTCAACAATTGAAAAACTTGTTAAGAATCTTGATCATGAGTCATTAGAAAAATTGCTTGCTCTTGCTTTAGAAAATGAGAGAAATAGAATATGCATGGTTGAAGCAGGAGTAGCAAAAGCGATTATTCAAAAAGTGATTATAAATAATTTTTACAAGCAAGGTAAAACAACATCTCTTGAAGAAGCTTTGAGAATTCTTCATTTAATTTTGCCTCTAGCCATCACCAATAATGACAACATCAACAACATCAAATGTTCCATAGTTGATGACAATTTTGACTTAGTCAACTCGTTGACTTTGATTTTACAACTTCACAATGATAACAAAAATTTCAAGGTAATAAATGAAGCAATGATTGTATTAAAACTTATATTTGAGGTAAAAAATTCAACCTCATTGTTGAATTTAAATGTTGATTTTTTTAGAGAAATAGTTAAAGTACTAAGAATTAGAAATAAAGCACTTCCTATTAAAGCTATGAAATCAGCATTACATGTGTTATTACAAACATGCCCTTTAGGTAGAAATAGGTTGAAGATTGTGGAAGCTGGAGCTATAAAAGAAATCATTAATCTTGCAATTGAAAAACAAGAAAAGAACCAAACAGAGCTTATATTTAAGCTTCTTGCTGATTTATGTTGTTGTGCTGATGGAAGAGAAAAATTTGTGCAACATGCAGCAGGAATTGCAATGATTTCTAAAAGAACATTAAGGGTTTCATCAACAACTGATGATTGTGCTCTTCAAATATTTTGTTTGATTTGTAAATATTGTGCTACAAATGATGTTGTTCAAGAAATGTTAAGGGTTGGTGCTGTTTCAAAACTTTGTATGGTTATGCAAGCTGATTGTGGTTCTTATTTGAAGGAAAAAGCTAGAGGTATTCTTAGGTTACATTCTAATGTATGGAATAATTCTCCTTGTATTCAAGTTTATTTGTTAACTAGACACCAAAGGTTTGGTGAGTGA 1236 0.3115 MEENEIPQFFLCPISLQIMKDPVTTITGITYNRESIEQWLLTSKSCTCPITKQPLPRSSEFLTPNHILQRLIQSWHLQNSSISVEKIPTSTIEKLVKNLDHESLEKLLALALENERNRICMVEAGVAKAIIQKVIINNFYKQGKTTSLEEALRILHLILPLAITNNDNINNIKCSIVDDNFDLVNSLTLILQLHNDNKNFKVINEAMIVLKLIFEVKNSTSLLNLNVDFFREIVKVLRIRNKALPIKAMKSALHVLLQTCPLGRNRLKIVEAGAIKEIINLAIEKQEKNQTELIFKLLADLCCCADGREKFVQHAAGIAMISKRTLRVSSTTDDCALQIFCLICKYCATNDVVQEMLRVGAVSKLCMVMQADCGSYLKEKARGILRLHSNVWNNSPCIQVYLLTRHQRFGE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3889 411 Gene3D - 77 394 IPR011989 -
Tpr7g3889 411 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Tpr7g3889 411 PANTHER WDSAM1 PROTEIN 4 405 IPR045185 GO:0061630
Tpr7g3889 411 SUPERFAMILY ARM repeat 102 386 IPR016024 -
Tpr7g3889 411 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Tpr7g3889 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 405 - -
Tpr7g3889 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Tpr7g3889 411 SUPERFAMILY RING/U-box 4 80 - -
Tpr7g3889 411 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Tpr7g3889 411 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3889 Tpr-Chr7 48117909 48119190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3889 2 398 U-box Gene Family AT2G35930 40.436 1.78e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3889 - - gmx:100787419 497.664