Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3880 ATGGTTTCTAAGATGGATCAGTATGAGATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCAATTCTTGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGCTGTAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTCGAATTAAGCACCCTTACATTGTTGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCAGCATTGATGAAAAAATCTAATGGGGTTTACTTTCCTGAGGAGAAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTTACAAAAGATCAAGATGTTCGCCTAGGGGATTTTGGACTTGCTAAGACACTAAAAGCAGATGATTTGACTTCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTACAGATATTCCTTATGGATTAAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGATGGATTGATAAGCAAGATAAATCGATCCTCTATTGGTGCTTTGCCTCCCTGTTACTCTCCATCCTTGAAAACACTGATAAAAGGCATGCTGAGGAAAAACCCCGAGCATCGTCCATCAGCATCCGATATCTTAAAGCACCCTTATTTGCAGACTTATGTTCATCAATATCGTTCGTCTCTCTGTCCTCCATCAGCCTCTTCTCCTGAAAAGCCAATTTCTTCTGTCCATGTTCCTCGGGAAAACATGGCCGAAAGTGAAAACAGTAATAGTTGGAGTAGTGATAAAGGTAGTTTGATGTCAAGTGAGAGAAACGCTGCAAAAGCAGCACCAAAGGGTGATAACAAAATCAACGAGGTAGACCTGACATCAATTGACGATAATGGGTCTGACCTTCTCATGCCAGGTGGAAAAGGAAATAGCTCCAGCAATGTCAATGCCAAAACAGATAAACAGGAGATTAGGAAGCAAACTCACATTGAACACCATTCTAATGTTGGATCTAAGCAAGTAAAAGCAGTTAAGAATGTAATGATAGCACCAAAACATGAAAAGGTTAGAGAGACAAGTACTCCAATGAGAGGCAGTTTGATGGAGGCTGGTGGTATATCAATACAGAAAATCAATACAGAGACATTGTCTAAATTGCCGAAGCCTGATTTTGGTGTTACTGGATTGAAGCCTATTTTAGAGGTGCCAACTATCGGACCTTCAAAAGCAACACTTAATTGTAAAAAACGAATCGAAGGATCACATACTACAAAACATCAGAAGTTACAGGTGATAGAGTCTACACCAAAAAATAAACCTAGGCATAAGTTGTCGCCTTCTTGTCCTATCAAACAGGTAGTAGCAGAAGCTGTAATTCCTGCCAAGCCAAAACAAAAGACTCCTCCAAGCCTACTTAAACCACCCTCATTTCCGAGATGTATAAGGCAGGCCGCACATGATATGCGAAATGCAGCAAATGATACAGAACAGATAAGTCCAAATAAAATAGCTCAGGACCTAAAGATGGGCCATCATCAGTTGACTAGGGGCCATCTAGCACATGTTTCTAGAGAGCCTTTGAAGGCTTTTGAAAGGAGTACCAAAGGAATGCAAACAGACAACAGCATTTCTGTCTCACCTTCCGTCTCTATTCAAGGATTCGAATTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGAACCAACACTCCCTGAACATGGGAGTTTTAATCACACTGAAAAGGTGGAATCACTTCCAGATAGCAGCGAACCTGATGAAATTTTTTATGGTGAAACCTCTCCATTTACACCAATTTTTCAGAATACCATTACTAGTAGTGAGAAATTAAGTCCCAGTTTAACTCTGGATCACTCAGTTCAACATCCTAAGGTAATGTATGCTTCTGGTGACAGCTTTCTCGTAAATAAAACAACTACATCTGGTCCCTGTGAGTGTGATGTTCCCTCTGCCGAAGTGACACAAGAAATCAATGACCTTCAAGATATTTCTAAGGAAATGGCTTCAATTAAAACTTTTAGGCATCCATTCCCTATTTCTGGAGAAAAGTCTGTTTGTGATGTTAGTCCAGTAAGCTTGCCAAATAGTAGGCCTGGTAAAGTTAGCCAGTCAAAGTTTATGTGCGTCTCGACTGGTGACGAGAAATTCATGGTGAGGGAAAGAGTCTCATCAGTGGCTGAAACTGCTCCTCTGAATATATCTACTAAAATTTCAAGCCAGAAAGTTTTACAAGACGAGAAGAGAATGATTTTACAGAATCCAGCAACAGAAAGGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTTATACGCCATAGCAGTTATCGTATTGGAAGTGAGCTTCCAGTAAAGGAATCAACTGAGACGGGAGTTACAAATGTAGATGTTGGTAAACTTATCAACATTGTAAAGGATGATTTAGAAATGAGAAACGCGGGAACTCCTTTGTCCCTTAAATCTTCAAATTGCTCTGAAGTTACTAGCCTTAACTCAAGTACTACTGATAATATGGAAATCAGAAACTTGAGCTTGAAGTCAATTTTTTCTAACTATCCTGGTGTTGAGGAACATAATGTGAAAAACCCTGACTCACTAGTTTCAAAACCTGACTCCGCTAAATATACCAAATATAACCCTCCTACAGCCGAAGCGGAAATGCCAGAAAAGGAATTATTGGATGTTAAATCTTCCAAGCAGAGAGCTGATGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTTTGAAGCCCTTTGGAAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTGGCCAAAAGTCTGAAAGGATTCATCTTTGAGGAAAGTGGGGGACGTAGTTAA 3045 0.4069 MVSKMDQYEIMEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKICKWVTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGLKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRSSIGALPPCYSPSLKTLIKGMLRKNPEHRPSASDILKHPYLQTYVHQYRSSLCPPSASSPEKPISSVHVPRENMAESENSNSWSSDKGSLMSSERNAAKAAPKGDNKINEVDLTSIDDNGSDLLMPGGKGNSSSNVNAKTDKQEIRKQTHIEHHSNVGSKQVKAVKNVMIAPKHEKVRETSTPMRGSLMEAGGISIQKINTETLSKLPKPDFGVTGLKPILEVPTIGPSKATLNCKKRIEGSHTTKHQKLQVIESTPKNKPRHKLSPSCPIKQVVAEAVIPAKPKQKTPPSLLKPPSFPRCIRQAAHDMRNAANDTEQISPNKIAQDLKMGHHQLTRGHLAHVSREPLKAFERSTKGMQTDNSISVSPSVSIQGFEFSDFATTFIDLSEPTLPEHGSFNHTEKVESLPDSSEPDEIFYGETSPFTPIFQNTITSSEKLSPSLTLDHSVQHPKVMYASGDSFLVNKTTTSGPCECDVPSAEVTQEINDLQDISKEMASIKTFRHPFPISGEKSVCDVSPVSLPNSRPGKVSQSKFMCVSTGDEKFMVRERVSSVAETAPLNISTKISSQKVLQDEKRMILQNPATERPASGHLPPAFDDVIHVIRHSSYRIGSELPVKESTETGVTNVDVGKLINIVKDDLEMRNAGTPLSLKSSNCSEVTSLNSSTTDNMEIRNLSLKSIFSNYPGVEEHNVKNPDSLVSKPDSAKYTKYNPPTAEAEMPEKELLDVKSSKQRADALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGFIFEESGGRS* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3880 1014 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g3880 1014 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g3880 1014 CDD STKc_Nek 7 262 - -
Tpr7g3880 1014 SUPERFAMILY Protein kinase-like (PK-like) 5 311 IPR011009 -
Tpr7g3880 1014 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Tpr7g3880 1014 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 998 - -
Tpr7g3880 1014 MobiDBLite consensus disorder prediction 464 487 - -
Tpr7g3880 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Tpr7g3880 1014 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 998 - -
Tpr7g3880 1014 MobiDBLite consensus disorder prediction 293 332 - -
Tpr7g3880 1014 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g3880 1014 MobiDBLite consensus disorder prediction 293 313 - -
Tpr7g3880 1014 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Tpr7g3880 1014 Gene3D Transferase(Phosphotransferase) domain 1 90 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3880 Tpr-Chr7 47999947 48006853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3880 6 315 MAP Kinase Kinase Kinase AT3G13530 28.981 1.47e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr7g3880 Pkinase 1.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3880 K08857 - gmx:100818943 1397.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3880 7 47999947 48006853 Tpr7g3880 7 47999947 48006853 ECH
Tpr7g3880 7 47999947 48006853 Tpr4g1474 4 14512653 14518576 PCT