Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3872 ATGACAATGGAAATGGTTTCTAAGGAAGCTCAGATGTCTATTGCTGCTTCTTCTATGTTTCCTGGTTTCAGATTTTGTCCCACTGATGAAGAGTTGATTTCTTATTATCTTAGAAAAAAATTAGATGGTCATGAAGAAAGTGTTCAGGTTATTTCTGAGGTTGAACTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCACCCCGTGGAAGAAAGTATCCAAACGGTTCACAAAGTAAAAGAGCTACTGATTGTGGCTATTGGAAAGCCACTGGAAAAGAGCGCAATGTGAAATCAGGTTCTAATGTCATAGGTACGAAACGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACAGAATGGATTATGCATGAGTACTGCGTCAGTGACAGGTCTCCGGATTCTTTGGTAGTTTGTCGCCTCAAGAGAAACACAGAGTTTCGTGTGAACGATGCTTCCAATAGAGCCTCTTCAAGTCAAGTTAACCCGGTGCATTCACATGAAAGTGATTGTGCTGTCTCAGAAGGTGGTATTGATGATAAAAGGCGCATTTGTGATCATGAACAAGAAAAGGAGGTTGATGGTAGTTCCAGGCGTGACAGCAGCAGTTACGGTTCACCTTCAATGGAACAAATTGATTCCGTGTCTGAATCAAATCAAAGACCGGCTAATGACGCTACTTTGACAGACTTTTCGGGCCAGCTAAAGATGGATGAAGAGGATTGTTATGCTGAGATACTAAAGAATGATATCATAAAATTAGATGAATCATCAATGGCTCAAGGGGCTCAAACAAGACAACATGACCTTGCATATTCTCATCCCTGCCAAGGCACTGCACAGAGGAGAATACGATTAAGGGTTGCGAAATCAACACATTCTCAAACAGGAGTTCGTTTCTCAAGAACAATGCACCAATCAAAGAGTAGCTTCTTTGCTAAAATGACCAACCGTTTGATGATATTTGCTTTCTTTGTTTTCACTCTTATGGCTATATTTTTTTGGTATTTATTGGGTGGTCACAAACAATTGAGAAATATTGTGGGAAAGTTTCGGGCGTTAGGAGTTATGTCGAGGCCTATGTTGCTTGTTTTCTTGCTTATTATACTTATAATCACTTCACAGTTTGAGTGGAAGCAACCGCTTGTGTCCGATGTTGAGTCCAATTCCAGTTTAACTCAAAAGCAGCATCGTATTTCTAATGCTGAAGAAACCGTTAAGGAGAAGATTATTTTAGTGCAAGAGAAAAATATTCGAAGACTGAATGAGCTTGTCCGACATCTTCAAGAACAACTACAGCAGTGTAAAGGAAACAATGGAACTATAAATAGCACTGTAGTCCCTCTAACTGAACGGATTCTTGAGCTTGAGCGACAACAAATTTTAGAGGATTAA 1446 0.3976 MTMEMVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVSDRSPDSLVVCRLKRNTEFRVNDASNRASSSQVNPVHSHESDCAVSEGGIDDKRRICDHEQEKEVDGSSRRDSSSYGSPSMEQIDSVSESNQRPANDATLTDFSGQLKMDEEDCYAEILKNDIIKLDESSMAQGAQTRQHDLAYSHPCQGTAQRRIRLRVAKSTHSQTGVRFSRTMHQSKSSFFAKMTNRLMIFAFFVFTLMAIFFWYLLGGHKQLRNIVGKFRALGVMSRPMLLVFLLIILIITSQFEWKQPLVSDVESNSSLTQKQHRISNAEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCKGNNGTINSTVVPLTERILELERQQILED* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3872 481 MobiDBLite consensus disorder prediction 189 215 - -
Tpr7g3872 481 Gene3D NAC domain 28 166 IPR036093 GO:0003677|GO:0006355
Tpr7g3872 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 13 364 - -
Tpr7g3872 481 MobiDBLite consensus disorder prediction 168 248 - -
Tpr7g3872 481 MobiDBLite consensus disorder prediction 168 184 - -
Tpr7g3872 481 Pfam No apical meristem (NAM) protein 21 144 IPR003441 GO:0003677|GO:0006355
Tpr7g3872 481 Coils Coil 428 455 - -
Tpr7g3872 481 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Tpr7g3872 481 MobiDBLite consensus disorder prediction 216 248 - -
Tpr7g3872 481 ProSiteProfiles NAC domain profile. 19 161 IPR003441 GO:0003677|GO:0006355
Tpr7g3872 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3872 Tpr-Chr7 47917917 47928816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3872 6 276 NAC Transcription Factor Family AT2G27300 53.506 7.29e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr7g3872 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3872 - - gsj:114373381 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3872 7 47917917 47928816 Tpr7g3872 7 47917917 47928816 ECH