Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3840 ATGTACAGCAATTTCAAGGAACAAGCGATAGAGTACGTGAAACAAGCGGTTCATGAAGACAATGCTGGTAACTATGCAAAAGCGTTTCCTTTATATATGAACGCTTTGGAGTATTTCAGAACTCATTTGAAGTACGAAAAGAACCCTAAAATCAGAGAAGCTATTAAGCAGAGATTCACCGAGTATTTACGTCGTGCTGAAGAGATCAGGGCTGTACTTGGTGATGGTGGACCTGGTCCAGCTTCTAATGGTGATGCTGCTGTTGCTACAAGGCCAAAGAGTAAGCCTAAGGATGGTAGTGGTGGTGGTGGTGGTGGTGGTGAAGGTGGAGGTGATGGAGAGGATCCGGAACAGGCGAAGCTTAGGGCGGGGTTGAATTCGGCGATTATTAGGGAAAAACCTAATGTTAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCTAAACAGGCTTTGCAAGAAGCTGTTATTTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGGAAATCGTATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTTGTTTCAAACCTTTTCCAAATGGCCCGAGAAAATGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTTTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCCATTAGGCGTCGTTTTGATAAGCGTATTTATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTGACTGAAAGGGATTTTGAATACTTGGCTAGCAGGACAGATGGGTTTTCTGGTTCAGATATATCCGTCTGCGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAAAGTCCAGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAAGGTGCAGTTCAAACTACAATGCAGGATCTTGCTACAAAAGGACTTGCTTCTCAGATCCTTCCACCTCCTATTACGAGAACAGATTTTGAAAAGGTTCTGGCAAGACAAAGGCCTACAGTAAGCAAAACTGACCTTGAGGTTCATGAGAAGTTCACAAAGGAATTTGGAGAAGAAGGTTAA 1329 0.4266 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIREAIKQRFTEYLRRAEEIRAVLGDGGPGPASNGDAAVATRPKSKPKDGSGGGGGGGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARENAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTERDFEYLASRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMQDLATKGLASQILPPPITRTDFEKVLARQRPTVSKTDLEVHEKFTKEFGEEG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3840 442 CDD AAA 142 305 - -
Tpr7g3840 442 MobiDBLite consensus disorder prediction 73 114 - -
Tpr7g3840 442 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Tpr7g3840 442 Gene3D - 307 422 - -
Tpr7g3840 442 Gene3D - 6 74 - -
Tpr7g3840 442 Gene3D - 134 430 IPR027417 -
Tpr7g3840 442 Pfam ATPase family associated with various cellular activities (AAA) 176 305 IPR003959 GO:0005524|GO:0016887
Tpr7g3840 442 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 442 - -
Tpr7g3840 442 SMART smart 2 79 IPR007330 -
Tpr7g3840 442 SUPERFAMILY MIT domain 2 80 IPR036181 -
Tpr7g3840 442 PANTHER AAA DOMAIN-CONTAINING 1 442 - -
Tpr7g3840 442 Pfam Vps4 C terminal oligomerisation domain 375 439 IPR015415 -
Tpr7g3840 442 ProSitePatterns AAA-protein family signature. 277 296 IPR003960 GO:0005524|GO:0016887
Tpr7g3840 442 CDD MIT_VPS4 4 77 IPR045253 -
Tpr7g3840 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 438 IPR027417 -
Tpr7g3840 442 SMART AAA_5 171 307 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3840 Tpr-Chr7 47668711 47672882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3840 170 363 Calmodulin-binding Proteins AT3G56690 36.224 4.17e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3840 K12196 - gmx:100788150 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3840 7 47668711 47672882 Tpr7g3840 7 47668711 47672882 ECH
Tpr7g3840 7 47668711 47672882 Tpr4g1530 4 15024710 15031442 ECH
Tpr7g3840 7 47668711 47672882 Tpr4g1530 4 15024710 15031442 PCT