Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3805 ATGAAGCTCCCACAGAAATCCAAAGCGACGGAACAACCCTCGGTTTCGAAGCGGAGAGGTCGCCCGCGTAAACAGCGAAGAAAACGCAATGAAACAGTAACGGATGAATCCAATATTTCTAAGCCAATTGCATTGATTGGCCGTTATGTTTCGAAAAAGTTATCGAAAAATGCTGTTTGCATTGGTAAAGTGATTAGTTACAAGATTGGAATTTATAGAGTGGAATTTGAAGGAGGTATCTGTGAAGAGTTAAATAGTTCTGAAATTAGGAAGATTATGTTGGAGGACTTTGATTTGGATCATGATTTGATTCGACGAAAAAATGAATTGGATGAATCGTTGATGAGGAAGATAGTCGATGAATCGGATAAGAATCCGAGCGAATTGAATGTGGATGAGGAAGAGAAGAATTCGAGCGAATTGAATGTGGATAAGGAAGAGGAAATGCTAGATACCGACGCTGATTTGAGTTCGGATGTTGAGACAGCGGTTGAGTTGCCGCCGCAGTTAGAATTGCCACCGGAATTGATGCTACCGCCTTCTTCAGGAACTATTGGTGTTCCTGAGAGTTCTGTTTATGATTTGTTTTCAGTTTACACATTTCTGCGATCGTTTAGTACAAGATTATTTTTGAGTCCGTTTAGTTTGGATGAATTTGTCGGCGCCCTTAACTGTGAAGTTTCGAATACCTTGATTGACGCAGTACATAATGCTTTGATGCGGGCTTTGAGACGCCATTTGGAAAATCTTTCAGCTGAGGGCTCAAAGATAGCATCAAGATGTCTAAGGTACAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAGTTCAATATTTAGCAGTTAATGGATGGACTAAGGGGTCTGAGTGGAAAGGATTTTATGACGAGATTTTTCACGGCGAGTATTATTCATTGCCTGCAACTAGGAAGTTAAAAATATTACAAATTCTCTGTGATGATGTTTTGGAGTCTGAGGAACTAAGAGCCGAGATCAACATGCGTGAAGAATCAGAGGCCGGGAAGAATTATGATGCTGAGGATATTCCTCATGCGGAAAAGGGACCGAAAAGAGTCCATCGACGATGTGCCAACACTGCTGATTGCCAGGATGAAGAATCTATGAAGTTTGTTTCAAAATTAGATGATGTGAACTTACCTGGCAATTCTGAGGACGAGGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCGGAATGCAAAATAAATACAATTGGGCCAACAATTGCACGGGGGGGAACATCTCTTAGGGGGGCTGAAATGTTTGGAAATGATTTGTACGGGCAGTCTTTCATCGGTACTTGCGACCACTTACTGGTGCTCAGTGGCAACAATGGGGAAGTTTGTCGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGTGTTCCAAATGGAACACATATAAACTCAGAAAATTCAAAGATAGATGAAAAAATCTCTGCTACATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTGTTAGTTTAGGGAAAGCAGAATATGGTTTAACATCTGTGAATGGAGTCTGTAGTGATAATATGGCCCCATCTCTTGCACTGGTTACCAGTAGTCCCATTTGTGAAACCAATGGCAATACTAACAAGTCATCTGCCGCTATTCCTGACAAGAGCACCTTGGTAAGCAATCAATTTATAAATTGTGGGCAAACTAAAGGTGACTTAGGTCCTGGAAAGTCTAATGATTTTGTGTATAGGGGCTATTCCTATAAACAACAAGCATATGTTAATACTTATATGCATGGCGACTTTGCTGCATCTGCAGCTGCTAGTTTGGCTATTCTTTCTTCAGACGATTCTAGACCAGAGGGTCACGTGTCTGACTTGAGGAAAGCTGCATCTGAAAACACTAACCTGTTAGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGTATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTTAGCGGAAACTATAGAAAGCAATGGCGTGAACAAGTGGAAAGGGCCACAACATTTAGTAACATCAAGCCCCTTTTACTTCATCTTGAGGAGAACATTCGCACAATTGCTTTTTGTGGTGACTGGGTGAAGCTTGCAGATGAGTGGTTGGTTGAATCTCCTACAATCCAAAGTGCCACATCTACTCTTGGAACAACACAGGAACGTGCACCATGCGACAGATGTAGAAAATTACCTATCAAATATCCATTTGACACTTCCCCTGAAAACTTTGGCTGGTGGAATGGCAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTTATGGTCAGAAAAGCAGCTCGTCAAGGTGGTTTGAGGAAAATTTTGGGTATTGTCTATCCTGAAGTCTCTGTAATTCCTAAAAGAAGCCGTCAGCTGTTTTGGAGAGCTGCCGTTGAGATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGATTGATCTGATTCAGCCGGAGTGTAACCTCCAGGATGGAAAAGGTCAAGATACTGAAATTTATGCTTTTAGAAACGCAACTATTCATGACAAAAAGTTTGCACAGGGCAAAACATCCTATGGTATAGATTTTGGGAGCCAAAAGCATATTCCTTCTCGGATAATGAAGAATGCTGAAACAATAGATGAAGGGCCAGATGGAAAGAAGTATTGGTTTTCTGAAACTTTCATTCCTTTATATTTGGTAAAAGACTATGAAGTAAGAAACAAAGAAGAGCCATCTCGTAAAGATAACTTGAATGTTGCATCTCGATGGCACAAAAGGCGGTTGAATGCTATCTGCAAGGACATATTTTTTTACCTCACTTGCAAGAGAGACAAAACAGACATGTTATCATGTTCTGTATGTAATCAGGGTGTTTTATTTAGGAATGCTCTCAAGTGTAGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCAATAAATTCAACATTCTCTACATATAAAGATGTTGAGTTCTTGATCACATGCAAACAATGTTATCATACCAGATTACTTGCTCAGAAAGAGACCAGTTACAAATCTTCAACCACTCCCTTACTGTTAAAAGGAAGAGAACATGGCTCTTCGACAATTTTGAAGAAACCAGAGCCTAAATGTGATGATCAAATACTGAGACCTACCAGGGTAAAGGATTGTTGTCCTGACATGAAAAAAGTTGCTTCCCAGACCCCTCTGGAAACCAAAAGCAGTAGCAGAAAATCCTCTTGGGGTATTATATGGAGAAAGAATAATAGTGAAGACACAGGCATCGATTTCAGGCTAAAAAACATAATTATGAAGCGACCCCGTTCAAGCTTGCCTCAATTAGAACCTGTTTGTCACTTATGCCATAAGCCATATAACTCTGATCTAATGTATATAGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTATGCTGGGCTTCAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTGTCTGTCCTTACTCTGATTCAATGTGCAAGGAGCAAGTTGTAGAGAAGTCACACTCACGGGGTTCTAAGAGAAAAAATTATGGAGCAGAGTCTTCTGGTTCTGGAACACTAGCTGACACAAGAGCAAGGGAGCCTGCTACTCCTATCTTTCCTATAGAAGATGTTTCTAAACAAGAGAACAGTCCTCTGCCGTTTTCTCTTTCAAATGTCGAACTGATTGCAGAACCCATGTCAGAGTTAGATGCAGGCATTGAGTATAACGTCGTCTCTGGGTCAGGGCTTCAGAAAATACCCGAGGAGGAAAGTAATGGCACTTTTGGGGGTGAAGTTCGGCATGCTGAAATTTCAACACGGGATGAAATGAATAATCTGCCAGCAGAGGTTTTACCACCTTTTGTAGAACTTGATTCTCTGTTCTCTGACTGCGATCTTCTGAATGACTCGGAAACTTTAGATAATGAATACATGGATTTTGAATCCGAAACTGATTTCTCCCTGTCTGAACTTCTGAACCTAGATAATAACAGTCAATTTGAGGAAGCTGATGTGCCCAGGGACTTATCAGGATTTGCAAAAGATTCTTGTACACTAGGCGTTCCCGAAGAACGTGCAACTACTAGTTTACAGAACAACCAGGAACCTACAATTTCATCACATCAAAATGTTCATAATTGTTCGCAATGTTCAAAAACAGAACCAGCCCCCGATCTCTCTTGTCTGATTTGTAAAATGTGGATTCACAGCAAGTGTTCACCCTGGATTGAATCACCATCTAGGCTTGGAGATTGGAGATGTGGTAATTGTAGGGAATGGCAATAA 4779 0.4082 MKLPQKSKATEQPSVSKRRGRPRKQRRKRNETVTDESNISKPIALIGRYVSKKLSKNAVCIGKVISYKIGIYRVEFEGGICEELNSSEIRKIMLEDFDLDHDLIRRKNELDESLMRKIVDESDKNPSELNVDEEEKNSSELNVDKEEEMLDTDADLSSDVETAVELPPQLELPPELMLPPSSGTIGVPESSVYDLFSVYTFLRSFSTRLFLSPFSLDEFVGALNCEVSNTLIDAVHNALMRALRRHLENLSAEGSKIASRCLRYSEWSLLDTLTWPVFLVQYLAVNGWTKGSEWKGFYDEIFHGEYYSLPATRKLKILQILCDDVLESEELRAEINMREESEAGKNYDAEDIPHAEKGPKRVHRRCANTADCQDEESMKFVSKLDDVNLPGNSEDEVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTIARGGTSLRGAEMFGNDLYGQSFIGTCDHLLVLSGNNGEVCRKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCVPNGTHINSENSKIDEKISATLLPHVVENDHKGVSLGKAEYGLTSVNGVCSDNMAPSLALVTSSPICETNGNTNKSSAAIPDKSTLVSNQFINCGQTKGDLGPGKSNDFVYRGYSYKQQAYVNTYMHGDFAASAAASLAILSSDDSRPEGHVSDLRKAASENTNLLAKAFSLTASRFFWPSSDKKLAEVIRERCGWCLSCKALVSSKKGCMLNHAAICATKSAMKILSGLAPVRSGEGISPTIATYVIYMEESLCGLIDGPFLSGNYRKQWREQVERATTFSNIKPLLLHLEENIRTIAFCGDWVKLADEWLVESPTIQSATSTLGTTQERAPCDRCRKLPIKYPFDTSPENFGWWNGKFTKSVFQKAALPKFMVRKAARQGGLRKILGIVYPEVSVIPKRSRQLFWRAAVEMSRNASQLALQVRYLDFHIRWIDLIQPECNLQDGKGQDTEIYAFRNATIHDKKFAQGKTSYGIDFGSQKHIPSRIMKNAETIDEGPDGKKYWFSETFIPLYLVKDYEVRNKEEPSRKDNLNVASRWHKRRLNAICKDIFFYLTCKRDKTDMLSCSVCNQGVLFRNALKCSACQGYCHEGCSINSTFSTYKDVEFLITCKQCYHTRLLAQKETSYKSSTTPLLLKGREHGSSTILKKPEPKCDDQILRPTRVKDCCPDMKKVASQTPLETKSSSRKSSWGIIWRKNNSEDTGIDFRLKNIIMKRPRSSLPQLEPVCHLCHKPYNSDLMYIGCETCTRWYHAEALELEESKIFSMLGFKCCRCRKIKSPVCPYSDSMCKEQVVEKSHSRGSKRKNYGAESSGSGTLADTRAREPATPIFPIEDVSKQENSPLPFSLSNVELIAEPMSELDAGIEYNVVSGSGLQKIPEEESNGTFGGEVRHAEISTRDEMNNLPAEVLPPFVELDSLFSDCDLLNDSETLDNEYMDFESETDFSLSELLNLDNNSQFEEADVPRDLSGFAKDSCTLGVPEERATTSLQNNQEPTISSHQNVHNCSQCSKTEPAPDLSCLICKMWIHSKCSPWIESPSRLGDWRCGNCREWQ* 1593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3805 1592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 465 IPR013083 -
Tpr7g3805 1592 CDD PHD_SF 1545 1588 - -
Tpr7g3805 1592 SUPERFAMILY FYVE/PHD zinc finger 1265 1321 IPR011011 -
Tpr7g3805 1592 MobiDBLite consensus disorder prediction 121 145 - -
Tpr7g3805 1592 ProSitePatterns Zinc finger PHD-type signature. 404 445 IPR019786 -
Tpr7g3805 1592 MobiDBLite consensus disorder prediction 1340 1361 - -
Tpr7g3805 1592 SMART PHD_3 1267 1315 IPR001965 -
Tpr7g3805 1592 SMART PHD_3 403 446 IPR001965 -
Tpr7g3805 1592 SMART PHD_3 1106 1155 IPR001965 -
Tpr7g3805 1592 SMART PHD_3 1544 1589 IPR001965 -
Tpr7g3805 1592 ProSiteProfiles DDT domain profile. 189 249 IPR018501 -
Tpr7g3805 1592 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 15 1589 - -
Tpr7g3805 1592 ProSiteProfiles Zinc finger PHD-type profile. 401 448 IPR019787 -
Tpr7g3805 1592 MobiDBLite consensus disorder prediction 1 36 - -
Tpr7g3805 1592 Pfam DDT domain 191 246 IPR018501 -
Tpr7g3805 1592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1263 1321 IPR013083 -
Tpr7g3805 1592 SMART testlast3 189 249 IPR018501 -
Tpr7g3805 1592 PANTHER PHD FINGER FAMILY PROTEIN 15 1589 - -
Tpr7g3805 1592 CDD PHD_SF 1267 1314 - -
Tpr7g3805 1592 MobiDBLite consensus disorder prediction 121 154 - -
Tpr7g3805 1592 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 293 336 IPR028942 -
Tpr7g3805 1592 SUPERFAMILY FYVE/PHD zinc finger 390 448 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3805 Tpr-Chr7 47122917 47130434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3805 42 1592 PHD Transcription Factor Family AT5G35210 41.029 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tpr7g3805 DDT 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3805 - - mtr:MTR_2g084620 1969.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3805 7 47122917 47130434 Tpr4g1602 4 16084340 16092896 PCT