Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3763 ATGAAGCTCCCACAGAAATCCAAAGCGACGGAACAACCCTCGGTTTCGAAGCGGAGAGGTCGACCGTGTAAACAGCGAAGAAAACGCAATGAAACAGTAACGGATGAATCCAAGATTTCTAAGCCAATTGCATTGATTGGCCGTTATGTTTCGAAAAAGTTATCGAAAAACGCTGTTTGCATTGGTAAAGTGATTAGCTACAAGATTGGAATTTATAGAGTGGAATTTGAAGGAGGTATCTGTGAAGAGTTAAATAGTTCTGAAATTAGGAAGATTATGTTGGAGGACTTTGATTTGGATCATGATTTGATTCGACGAAAAAATGAATTGGATGAATCGTTGATGAGGAAGATAGTCGATGAATCGGATAAGAATCCGAGCGAATTGAATGTGGATGAGGAAGAGAAGAATTCGAGCGAATTGAATGTGGATAAGGAAGAGGAAATGCTAGATACCGACGCTGATTTGAGTTCGGATGTTGAGACAGCGGTTGAGTTGCCGCCACAGTTAGAATTGCCACCGGAGTTGATGCTACCGCCTTCTTCAGGAACTATTGGTGTTCCTGAGAGTTCTGTTTATGATTTGTTTTCAGTTTACACATTTTTGCGATCTTTTAGTACAAGATTATTTTTGAGTCCGTTTAGTTTGGATGAATTTGTCGGCGCCCTTAACTGTGAAGTTTCGAATACCTTGATTGACGCTGTACATAATGCTTTGATGCGGGCTTTGAGACGCCATTTGGAAAATCTTTCAGCTGAGGGCTCAAAGATAGCATCAAGATGCCTAAGGTACAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAGTTCAATATTTAGCAGTTAATGGATGGACTAAGGGGTCTGAGTGGAAAGGATTTTATGACGAGATTTTTCACGGCGAGTATTATTCATTGCCTGCAACTATGAAGTTAAAAATATTACAAATTCTCTGTGATGATGTTTTGGAGTCTGAGGAACTAAGAGCCGAGATCAACATGCGTGAAGAATCAGAGGCCGGGAAGAATTATGATGCTGAGGATATTCCTCATGCGGAAAAGGGACCGAAAAGAGTCCATCGACGATGTGCCAACACTGCTGATTGCCAGGATGAAGAATCTATGAAGTTTGTTTCAAAATTAGATGATGTGAACTTACCTGGCAATTCTGAGGACGAGGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCGGAATGCAAAATAAATACAATTGGGCCAACAATTGCACGGGGGGGAACATCTCTTAGGGGGGCTGAAATGTTTGGAAATGATTTGTACGGGCAGTCTTTCATCGGTACTTGCGACCACTTACTGGTGCTCAGTGGCAACAATGGGGAAGTTTGTCGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGTGTTCCAAATGGAACACATATAAACTCAGAAAATTCAAAGATAGATGAAAAAATCTCTGCTACATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTGTTAGTTTAGGGAAAGCAGAATATGGTTTAACATCTGTGAATGGAGTCTGTAGTGATAATATGGCCCCATCTCTTGCACTGGTTACCAGTAGTCCCATTTGTGAAACCAATGGCAATACTAACAAGTCATCTGCCGCTATTCCTGACAAGAGCACCTTGGTAAGCAATCAATTCATAAATTGTGGGCAAACTAAAGGTGACTTAGGTCCTGGAAAGTCTAATGATTTTGTGTATAGGGGCTATTCCTATAAACAACAAGCATATGTTAATACTTATATGCATGGCGACTTTGCTGCATCTGCAGCTGCTAGTTTGGCTATTCTTTCTTCAGACGATTCTAGACCAGAGCGTCACGTGTCTGACTTGAGGAAAGCTGCATCTGAAAACACTAACCTGTTAGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGTATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTTAGCGGAAACTATAGAAAGCAATGGCGTGAACAAGTGGAAAGGGCCACAACATTTAGTAACATCAAGCCCCTTTTACTTGATCTTGAGGAGAACATTCGCACAATTGCTTTTTGTGGTGACTGGGTGAAGCTTGCAGATGAGTGGTTGGTTGAATCTCCTACAATCCAAAGTGCCACATCTACTCTTGGAACAACACAGGAACGTGCACCATGCGACAGATGTAGAAAATTACCTATCAAATATCCATTTGACACTTCCCCTGAAAACTTTGGCTGGTGGAATGGCAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTTATGGTCAGGAAAGCAGCTCGTCAAGGTATTTCTTTAAGTACATGTTTTACGTACATGTTATACTATGTTTAA 2814 0.4101 MKLPQKSKATEQPSVSKRRGRPCKQRRKRNETVTDESKISKPIALIGRYVSKKLSKNAVCIGKVISYKIGIYRVEFEGGICEELNSSEIRKIMLEDFDLDHDLIRRKNELDESLMRKIVDESDKNPSELNVDEEEKNSSELNVDKEEEMLDTDADLSSDVETAVELPPQLELPPELMLPPSSGTIGVPESSVYDLFSVYTFLRSFSTRLFLSPFSLDEFVGALNCEVSNTLIDAVHNALMRALRRHLENLSAEGSKIASRCLRYSEWSLLDTLTWPVFLVQYLAVNGWTKGSEWKGFYDEIFHGEYYSLPATMKLKILQILCDDVLESEELRAEINMREESEAGKNYDAEDIPHAEKGPKRVHRRCANTADCQDEESMKFVSKLDDVNLPGNSEDEVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTIARGGTSLRGAEMFGNDLYGQSFIGTCDHLLVLSGNNGEVCRKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCVPNGTHINSENSKIDEKISATLLPHVVENDHKGVSLGKAEYGLTSVNGVCSDNMAPSLALVTSSPICETNGNTNKSSAAIPDKSTLVSNQFINCGQTKGDLGPGKSNDFVYRGYSYKQQAYVNTYMHGDFAASAAASLAILSSDDSRPERHVSDLRKAASENTNLLAKAFSLTASRFFWPSSDKKLAEVIRERCGWCLSCKALVSSKKGCMLNHAAICATKSAMKILSGLAPVRSGEGISPTIATYVIYMEESLCGLIDGPFLSGNYRKQWREQVERATTFSNIKPLLLDLEENIRTIAFCGDWVKLADEWLVESPTIQSATSTLGTTQERAPCDRCRKLPIKYPFDTSPENFGWWNGKFTKSVFQKAALPKFMVRKAARQGISLSTCFTYMLYYV* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3763 937 SMART PHD_3 403 446 IPR001965 -
Tpr7g3763 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 466 IPR013083 -
Tpr7g3763 937 MobiDBLite consensus disorder prediction 121 145 - -
Tpr7g3763 937 ProSitePatterns Zinc finger PHD-type signature. 404 445 IPR019786 -
Tpr7g3763 937 PANTHER PHD FINGER FAMILY PROTEIN 15 923 - -
Tpr7g3763 937 Pfam PHD-finger 404 446 IPR019787 -
Tpr7g3763 937 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 293 336 IPR028942 -
Tpr7g3763 937 ProSiteProfiles DDT domain profile. 189 249 IPR018501 -
Tpr7g3763 937 Pfam DDT domain 191 246 IPR018501 -
Tpr7g3763 937 ProSiteProfiles Zinc finger PHD-type profile. 401 448 IPR019787 -
Tpr7g3763 937 MobiDBLite consensus disorder prediction 1 36 - -
Tpr7g3763 937 SUPERFAMILY FYVE/PHD zinc finger 390 448 IPR011011 -
Tpr7g3763 937 SMART testlast3 189 249 IPR018501 -
Tpr7g3763 937 CDD PHD2_CHD_II 404 445 - -
Tpr7g3763 937 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 15 923 - -
Tpr7g3763 937 MobiDBLite consensus disorder prediction 121 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3763 Tpr-Chr7 46522096 46525985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3763 42 925 PHD Transcription Factor Family AT5G35210 44.066 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tpr7g3763 DDT 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3763 - - mtr:MTR_2g084620 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3763 7 46522096 46525985 Tpr7g3763 7 46522096 46525985 ECH