Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3740 ATGTTGTCTAAAATGGACATGGAAGGAATTCTAAGCACAAAGGAACATGGTAATGATGCAAGTCATCTCATCAAAGGGAAGCGAACAAAACGGTTGAGACAGTTGTCACCTTGCACCGTGGCAACTACCACGGTGACATCAAGCTGTTCGAGTGCCACTGGAGGTGGTGGATCTTTTTCATCCACCACCTTCGATGACACTGAACAAGAAGAGGAAGCGGATATGGCTAATTGTTTGATTCTCCTAGCCCAAGGAAGAACGGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGAGAATCAATATCGACGTGCTCAGAGCCACCACTATGATAACAAACACCAACAGCAACAAATGGACGGTTATAACAAGATAGCAACAACTGAAAAAGCAACAAAAAACGGTTTTGAAAGTTATGAGTGCAAAACTTGTAACCGTTTTTTTCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGAAAAACAATCTTCACCTTCGCAACCGCGACAAATCGTTACCACAACCGGTGAATTTGAAGAAGAAAACAACAAAATCCACACCAAGAATATTACTACTATCAATCCTCTTGTTCCTCCAGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGAATTCACCTCAGGTCAAGCATTGGGTGGTCACATGAGGAGACATAGAGCTTCTATTGATAAAAGTAACAACAAAAACAACAACGTTGTAGCTTTTGAAGCTGTTCATGTTAAGTCTAGAAATATTCTAGAATTGGATCTTAATTTTCCGGCACCGGAGGAAGATATCTCGGATTCGACGTTTCAGTTTCCGGCGATGGTGGGGTGCCATTATTAG 924 0.4177 MLSKMDMEGILSTKEHGNDASHLIKGKRTKRLRQLSPCTVATTTVTSSCSSATGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGEGGGGGGGEENQYRRAQSHHYDNKHQQQQMDGYNKIATTEKATKNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSSPSQPRQIVTTTGEFEEENNKIHTKNITTINPLVPPVSLELRCGVNINFKPNKLNKIHECSICGAEFTSGQALGGHMRRHRASIDKSNNKNNNVVAFEAVHVKSRNILELDLNFPAPEEDISDSTFQFPAMVGCHY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3740 307 Gene3D Classic Zinc Finger 216 278 - -
Tpr7g3740 307 MobiDBLite consensus disorder prediction 154 191 - -
Tpr7g3740 307 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 302 - -
Tpr7g3740 307 Pfam C2H2-type zinc finger 138 163 - -
Tpr7g3740 307 Pfam C2H2-type zinc finger 229 253 - -
Tpr7g3740 307 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Tpr7g3740 307 MobiDBLite consensus disorder prediction 172 186 - -
Tpr7g3740 307 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Tpr7g3740 307 MobiDBLite consensus disorder prediction 1 26 - -
Tpr7g3740 307 SMART c2h2final6 229 251 IPR013087 -
Tpr7g3740 307 SMART c2h2final6 138 160 IPR013087 -
Tpr7g3740 307 PANTHER ZINC FINGER PROTEIN ZAT5 1 302 - -
Tpr7g3740 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Tpr7g3740 307 MobiDBLite consensus disorder prediction 9 25 - -
Tpr7g3740 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Tpr7g3740 307 SUPERFAMILY beta-beta-alpha zinc fingers 137 251 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3740 Tpr-Chr7 46291310 46292519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3740 10 307 C2H2 Transcription Factor Family AT2G28200 35.843 1.33e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g3740 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3740 - - gmx:100794834 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3740 7 46291310 46292519 Tpr7g3740 7 46291310 46292519 ECH
Tpr7g3740 7 46291310 46292519 Tpr1g1161 1 10482033 10484001 ECH
Tpr7g3740 7 46291310 46292519 Tpr1g4312 1 50192718 50194097 ECH
Tpr7g3740 7 46291310 46292519 Tpr4g1628 4 16637003 16638259 ECH
Tpr1g4312 1 50192718 50194097 Tpr7g3740 7 46291310 46292519 ECH