Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3712 ATGGCTGTTGCTGGAGTGCACAATGTATCTGTGGTGGAATCTACATTTTTGAGGGACTCTCATTCCCGGTCACCAAGGAGGCAAGAAGATGGAGGGAGGGGAGGTACTCGGTCATCCCCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACATGGTGAGACAAGTTCAAGGAAGATCTGATGAAGTATTAGTTCAACAGAGGAGTGATGGGTTGGTTGTAGATGCATCACAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGAGTCAGAATGGGTCTCAATATGAACAAGATCATGTGGACTTGAACAATTCTAGTCGTGAAAACTCTTCTGGTATTGGAGATGTTGGGAGGGAAAGAGTAAGGAAAGTTTTCAAGGAATGGATGAGTAATGGTGGTTCTAGGGTTCAAGCATCAAATATTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCGTGGAAAAACTGAGCAGGAAAGAGTGAGTGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGAGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTTCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGTTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGAATCCGTAAATTACGTGGTCGGCAGGCTCTGCTTGATATGGTTAAGACGAATGTGGTGGATAGGGAAAGAGATATTCAGGAATTGTTGGAACGTCGGGCTGTATCTAATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCCATTGATAATAATCGGCCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGATAATTTAGGTTATGGTCAAGCAGCAAGCAACCTATCTGTTACCTCATCTGACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCTACAAGTTCACAAGTAGTCGCCTCTGTACATTCCGAACAATCAAATCCTAATAACAAGGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCACTGCACAAAATGTTGATACAATGCCAATCGAAGATACCGGTAACGACCTTACCCAACCAAGTTTGCAAATTGAAGTTACGGACCATAGCAATATGCAAGAGCAAGAACCAAGTGAGGCACATATTGAGCAATCTCTGATGGGTGATTTAACTGGTGATGAAAGCAGCTTATCAAATCACAACAATCGTGTAGGGGACGATATTGTTGATAATGTAGATTCGGTTTCGGTTGTATCTACTGCTCTGGAAAGAGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTTGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAAAATATCTTGGGAAATGATGATGGAGATAATTCTCGTACTCAAGAGCAAGTAGCAGCCTCTGAAGTGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTGGAAATCTGGTTGGGACGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCTTCTCCCACCACAGAACAAGACCTGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGAGGACATTGTCAATAGTCCACTGAACCTGCCTTTACCACCACCAACTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCACGGAATGGCATAAATAATCAGCGCCAAGGAAATGTGCATTCATTTACAGGACACAACCGCTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAGTAATATGCAGAGAATGCTTGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATTAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCAAGGTGTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAAAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATCAATTGCTAGATAGTAGAAGAAAATGTCCAATGTGTCGAGCACCAGTGGTGGAAGTGGTTCGTGCATATTCTATATAA 2559 0.4279 MAVAGVHNVSVVESTFLRDSHSRSPRRQEDGGRGGTRSSPLLQMWRELEDEHMVRQVQGRSDEVLVQQRSDGLVVDASQENMNHMSEDAVLGENDSETWSQSQSQNGSQYEQDHVDLNNSSRENSSGIGDVGRERVRKVFKEWMSNGGSRVQASNITRGNSGSRGELRGKTEQERVSVVRQWVEMSSQLRGVSVGENREEQSSEFSNQTECVHDGLVVNQNEGQSEHISRRRIRKLRGRQALLDMVKTNVVDRERDIQELLERRAVSNFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYGQAASNLSVTSSDSDIDVDTIEQTGATSSQVVASVHSEQSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDGTAQNVDTMPIEDTGNDLTQPSLQIEVTDHSNMQEQEPSEAHIEQSLMGDLTGDESSLSNHNNRVGDDIVDNVDSVSVVSTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNILGNDDGDNSRTQEQVAASEVWQEDGSFQEAVEIWLGRPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPTTEQDLDQHRRDQIVGTEDIVNSPLNLPLPPPTPPPLPSWDRHSRHDNWSRNGINNQRQGNVHSFTGHNRFPLADEWDSISDLRIDMVRLQQRMSNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDQGVPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3712 852 MobiDBLite consensus disorder prediction 151 171 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 93 127 - -
Tpr7g3712 852 PANTHER PROTEIN, PUTATIVE-RELATED 1 852 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 16 40 - -
Tpr7g3712 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 852 - -
Tpr7g3712 852 CDD mRING-HC-C3HC5_NEU1 801 840 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 519 534 - -
Tpr7g3712 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 851 IPR013083 -
Tpr7g3712 852 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Tpr7g3712 852 SUPERFAMILY RING/U-box 792 846 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 19 33 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 486 518 - -
Tpr7g3712 852 Coils Coil 729 756 - -
Tpr7g3712 852 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 90 131 - -
Tpr7g3712 852 MobiDBLite consensus disorder prediction 485 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3712 Tpr-Chr7 45943739 45950393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3712 801 847 C3H Transcription Factor Family AT3G06140 42.553 6.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3712 - - vun:114184870 1053.89