Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3711 ATGGCGAAAGGAACAAATTCCGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAGAGAGAGTTTGCATTTGCAATGAAGGCACAATCTGAGATCGATTGTTCATTGGGTCGAACAAGGGGTGGTAGTAAGAACCGGAATGAGGCACCGGTTCAGGAGATACCGGTTGGGAAAAAAGCAAGGAAAACTGGTTTAGAAGATGTGGGGGGTGTAATGAGTGAAGAAGAGGCTAAAAGTGATGTTGTGGATCTTGTTAGTGATGATGACCCTAGGGTTTTGGTTGGTGAATTGGAATCTGTTAAGAGTGTTGTTGATACTGTGATTGATGATGATGAAACCCTTTTGGTTGATGAGAATTTGAATGAAGAAAAAGATAAAGTTGTGAATGAAATTGAAATGGAAATTTGTGAAACCAAAGAGGATAAAAATGATGGTGCTAATGAAGAAAAAGAAAAAGTTGTGAATGAAATTGAGATGGAAATTTGTGAAACCAAAGAGGAACAAAAAGAGGATAAAAATAATACCCTTTTTGATGATGGTGCTAATGTTAGTGTTAGTGTTAGGAAAAGGAAGAAGGTTACTTTGGAGAAACCAGTGAGAAGGTTTACAAGATCAGCATTGAAACAAAAAGATGAAGAAACTAAGGATAATAATGTTGTTGGAATGGTTGATAATGTAGTTAATAGGGAAACTGATGTTTTACCGGTTATGTCAACTCCGACTCCGATGAAATTGTCTAAGTCTGGTTTGAAGAAGTTTCCTGTCAAGTTAAAGGATTTTTTGGCTACTGGAATTCTTGAAGGGTTGAAAGTGAGATATGTCAAGGGACAGAAGGCGCGTAAACCTGGAGAAAAAGATTTGCCAGGAGTGATTAGAGATGCCGGGGTTTTGTGCTTTTGTGAGAGTTGTAAGGGGACTAAGGTTGTCACGCCGACTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCTCCGGAGTATACTTACCTTGAGAATGGAAGACCCCTTCGTGATGTCATGAATGCATGTTTGGGTTTTTCATTGGATAAGCTGGACGAAGCTGTCCAATTGGTCCTTGGTGATTTCACTTTGCAGAAATCTAATATCTGTTTCAATTGCAGAGGGCCAATTTCTGAATCTAGTAACGGCGTGTCAAAACTAGTATGCAATTCATGCATGGAGTTGAATGAGGCTCAAACTAGTAGCCAACTTCAAACAGCAGCAACATGCAGTAAAAGTATTCCCCCAGTAGTTCAACCCAGATCACCAGAAACAGTAGTAGTTCCAGAGTCATTAATCACTGGGATGGCGGTTCCAAAGTCATTAAACAATGAGATGGCAGTTCCAAAGTCATTAAACACTGAGATGGTGGTTCCAAACTCGTTGAACAGTGAGATGGCGGTTCCAGAGTCATCAAACACCCAGATGATTCCAAAGGGATTAAGCACTAGGATGAAGCAGAGCGCATCTCGTGGCAAGAGTCGGGGAAAAATAACTAGAAAGGATCTAGGGTTGCATAAGTTGGTATTTGAAGAGGACGTGTTAGAAGATGGAACTGAAGTAGCTTACTATTCTCATGGAAAGAAACTATTGGTCGGTCACAAACAGGGATACGGAATTAAATGTTCCTGTTGCGATACTGAGATTAGTGCTTCTCAGTTTGAAGCTCATGCTGGATGGGCATCTCGACGCAAGCCTTACCTGCACATTTATACATCTAATGGAGTCTCACTACATGAGTTGTCCCTCTCTATATCGAAAGATCGGAGATTTGCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCAAGTGGTACTTGGTATTGTAAATATTGCCAGAATAATTTCCAGATGGAGAGTAATGTGCAACGTAATGTGAATGCTCTCGCAGCTGGAAGGATTGCAGGCGTTGATCCTTTAGAACAGATAAGCCGAAGATGCATTCGCATTGTCAAAAGTGTAGCTGTCGACCATGGGGGATGTGCCTTGTGCGGAGGTCATGATTTCACTAAATTATTTAGTCCTCGAACAGTAATGATTTGTGATCAGTGTGAGAGGGAATTTCATGTTGGGTGTTTGAAGGAGAATAACATGCAGAATTTAGAGGAATTACCTGAAGGGGATTGGTTCTGCAGCACAAGTTGTAATCATATTCATTCTTCTCTAGTGAATTTGGTCGCTTCTGGGGAGAATAGTCTCCCGGATTCTATTATAAGTTTGATAAAAAAGAAGCGTGACACTGGCGCTAAAGAGAAAGGTGCAGACACTGGCGCTGAAGAGAAGGGTGCAGACACTGGCGCTGAAGAGAAGTGTGCAGACACTGTCGCTGAAGAGAAGGGTGCCGACACTGTCGCTGAAGAGAAAAGTGCCGACTCTGTCGCTGAAGAGAAGGGTGCAGATACTGTTGCTGAAGAGAAGGGTGCAGATACTGTTGCTGAAGAGAAGGGTGCAGACACTGACGCGGAAGAGAAAGGTGCAGACACTGATGCGGAAGAGAAAGGTGCAGACTCTGTCGCTGAAGAGAAGGGTGGAGACACTGGCACTGAAGAGAAAGGTGCTGACACTGGTGCCGAAGAGAAAGGTGGAGACACTGGCGGTGAAGAGAAAGGCATAGACACTGGTGTTGAAGAGAAAGGCGCAGACACTGGTGTTGAAGAGAAAGTTGGAGACACTGGTGTTGGTCCTGACATTAAATGGAGGGTTCTGAGCTGGAGGTTAGTTGCGTCTGGTGAAAATAAGCAATTGTCTAATGAATATAGGCAAGTGCTTTCAAAGGCTGTTTCAATCTTCCATGAGCAATTTGATCCTATCGTTGATTCTTCTTCTGGCCGTGATTTCATTCCGGCAATGCTGTTTGGAAAGAACATCCATGGACAAGATTTTGCTGGAATGTACTGTGCAGTGCTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTCTTTGGACCAGAAGTAGCAGAACTTCCCTTGGTGGCAACAGACGGCAAGTACCAAGGACAGGGTTACTTTCAGTGCCTGTTTTCTTGCATTGAGAGACTACTTCGATCTTTAAGTGTGAAAAACCTTGTCCTTCCGGCTGCTGAAGAAGCTAAATATATATGGACTAATAAATTTAAGTTTACAAAGCTCGAGCAGGATGAGATAAACAATTATAAGAGATTTTATCGTATGATGGTCTTTCAAGGGACCTCAATACTACAGAAGCCTGTTTGTGCACTACCAAGTACTTCTAAGGAGGAAACTGTGTAA 3348 0.4247 MAKGTNSDEFMVLSRVRTGLKREFAFAMKAQSEIDCSLGRTRGGSKNRNEAPVQEIPVGKKARKTGLEDVGGVMSEEEAKSDVVDLVSDDDPRVLVGELESVKSVVDTVIDDDETLLVDENLNEEKDKVVNEIEMEICETKEDKNDGANEEKEKVVNEIEMEICETKEEQKEDKNNTLFDDGANVSVSVRKRKKVTLEKPVRRFTRSALKQKDEETKDNNVVGMVDNVVNRETDVLPVMSTPTPMKLSKSGLKKFPVKLKDFLATGILEGLKVRYVKGQKARKPGEKDLPGVIRDAGVLCFCESCKGTKVVTPTVFELHAGSANKRPPEYTYLENGRPLRDVMNACLGFSLDKLDEAVQLVLGDFTLQKSNICFNCRGPISESSNGVSKLVCNSCMELNEAQTSSQLQTAATCSKSIPPVVQPRSPETVVVPESLITGMAVPKSLNNEMAVPKSLNTEMVVPNSLNSEMAVPESSNTQMIPKGLSTRMKQSASRGKSRGKITRKDLGLHKLVFEEDVLEDGTEVAYYSHGKKLLVGHKQGYGIKCSCCDTEISASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSISKDRRFAASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMESNVQRNVNALAAGRIAGVDPLEQISRRCIRIVKSVAVDHGGCALCGGHDFTKLFSPRTVMICDQCEREFHVGCLKENNMQNLEELPEGDWFCSTSCNHIHSSLVNLVASGENSLPDSIISLIKKKRDTGAKEKGADTGAEEKGADTGAEEKCADTVAEEKGADTVAEEKSADSVAEEKGADTVAEEKGADTVAEEKGADTDAEEKGADTDAEEKGADSVAEEKGGDTGTEEKGADTGAEEKGGDTGGEEKGIDTGVEEKGADTGVEEKVGDTGVGPDIKWRVLSWRLVASGENKQLSNEYRQVLSKAVSIFHEQFDPIVDSSSGRDFIPAMLFGKNIHGQDFAGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATDGKYQGQGYFQCLFSCIERLLRSLSVKNLVLPAAEEAKYIWTNKFKFTKLEQDEINNYKRFYRMMVFQGTSILQKPVCALPSTSKEETV* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3711 1115 CDD PHD1_AIRE 602 642 - -
Tpr7g3711 1115 PANTHER AUTOIMMUNE REGULATOR 1 1102 - -
Tpr7g3711 1115 PANTHER AUTOIMMUNE REGULATOR 1 1102 - -
Tpr7g3711 1115 Coils Coil 138 158 - -
Tpr7g3711 1115 ProSitePatterns Zinc finger PHD-type signature. 603 642 IPR019786 -
Tpr7g3711 1115 MobiDBLite consensus disorder prediction 778 914 - -
Tpr7g3711 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 660 IPR013083 -
Tpr7g3711 1115 SMART PHD_3 690 745 IPR001965 -
Tpr7g3711 1115 SMART PHD_3 602 643 IPR001965 -
Tpr7g3711 1115 Gene3D - 931 1101 - -
Tpr7g3711 1115 SUPERFAMILY FYVE/PHD zinc finger 685 743 IPR011011 -
Tpr7g3711 1115 ProSiteProfiles Zinc finger PHD-type profile. 600 645 IPR019787 -
Tpr7g3711 1115 Pfam Tify domain binding domain 539 584 IPR032308 -
Tpr7g3711 1115 Pfam Tify domain binding domain 291 346 IPR032308 -
Tpr7g3711 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 748 IPR013083 -
Tpr7g3711 1115 Pfam PHD-finger 603 644 IPR019787 -
Tpr7g3711 1115 SUPERFAMILY FYVE/PHD zinc finger 590 643 IPR011011 -
Tpr7g3711 1115 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 993 1091 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3711 Tpr-Chr7 45924752 45932076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3711 252 776 PHD Transcription Factor Family AT2G36720 41.667 6.27e-136 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr7g3711 TDBD 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3711 - - mtr:MTR_2g084425 1499.95