Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3710 ATGACCACACCTCCAAGCTTTGAAATTGGAAATCAAGGCATGCAAATGTTTCCTATGGTCATAGAAGATTTGATGCCATTACCAAATTCCATGGAAGGAATTTCAGGATCACCCTCTAATTCTCTCCTCTTCAATCTCTCTATTCTCAAAGAAAAATTCAATCAAGTGCAAAATCTTGTAGGTGTTATTCTCTCCCCAAATCAACAAGACTCATCAACTAATTCAATGGCTATATCCAACATGAATTCCACAATACAAGAAATCATAGTAACTTCCACATCAATCATGTTCACTTGCCAACAAATAGCTCTTGGTAATTTCCCTCAAGGTAATAATTCTACTACATGCACAAACCAAGAATTTCAAAAGCAACAATCTAATAATATTCAATCAAGTTTTGGCAACAATAATACAAACATAGATCTTAGAGGTCAAAGCTTATTAGATTCTAATAATGAGTCACAAGCATTGGATTGGTTTGGTGAAAGATATAAGCTAGAGCATGATATTGATGATCAAAAGTTTGGTCATGAAATTAGTGAAACCAATAATAGTATAAAAGGTTCTAATGAAGATATTTTAACGAAGAACAATTGTGATCGCGGTGATACAAGTCTAAAATTTGGGCCGTCTAATGCTCGGACTGGAGTAGAATGTGGCGAAGATATAGTTGAATTGGACGCGACGGATTTATTAGCTAAGTACACACATTATTGTCAAGTTTGTGGTAAAGGGTTTAAAAGGGATGCAAATTTAAGGATGCATATGAGAGCTCATGGTGATGAATACAAAAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAGCAATAGTGATTATTTGATGAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAATCAAAAACATGCCAAGTTTCAACCATTGAAATCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAGAGGTGTAATTTGAAGCAATTTTCAGTGCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGCTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATAGGGCATGTTGGTTTGTTTGTGGGACATCATCCAGTTATCAATGGTTTGTCATATAGTACTCACACAAATTAG 1182 0.3503 MTTPPSFEIGNQGMQMFPMVIEDLMPLPNSMEGISGSPSNSLLFNLSILKEKFNQVQNLVGVILSPNQQDSSTNSMAISNMNSTIQEIIVTSTSIMFTCQQIALGNFPQGNNSTTCTNQEFQKQQSNNIQSSFGNNNTNIDLRGQSLLDSNNESQALDWFGERYKLEHDIDDQKFGHEISETNNSIKGSNEDILTKNNCDRGDTSLKFGPSNARTGVECGEDIVELDATDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKSNSDYLMSMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLIGHVGLFVGHHPVINGLSYSTHTN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3710 393 PANTHER OS08G0562300 PROTEIN 13 389 - -
Tpr7g3710 393 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Tpr7g3710 393 SUPERFAMILY beta-beta-alpha zinc fingers 235 261 IPR036236 -
Tpr7g3710 393 Gene3D Classic Zinc Finger 235 306 - -
Tpr7g3710 393 Gene3D Classic Zinc Finger 325 374 - -
Tpr7g3710 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Tpr7g3710 393 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 13 389 IPR044300 GO:0010044|GO:0010447
Tpr7g3710 393 SMART c2h2final6 289 322 IPR013087 -
Tpr7g3710 393 SMART c2h2final6 327 349 IPR013087 -
Tpr7g3710 393 SMART c2h2final6 237 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3710 Tpr-Chr7 45911823 45913295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3710 39 382 C2H2 Transcription Factor Family AT5G22890 48.596 5.83e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g3710 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3710 - - gmx:100802769 433.721