Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3709 ATGTTGTCTAAAATGGACATGGAAGGAATTCTAAGCACAAAGGAACATGGTAATGATGCAAGTCATCTCATCAAAGGGAAGCGAACAAAACGGTTGAGACAGTTGTCACCTTGCACCGTGGCAACTACCACGGTGACATCAAGCTGTTCAAGTGCCACTGGAGGTGGTGGATCTTTTTCATCCACCACCTTCGATGACACTGAACAAGAAGAGGAAGCGGATATGGCTAATTGTTTGATTCTCCTAGCCCAAGGAAGAACAGGAGAAGGAGGAGGAGAAGAAGAGAATCAATATCGACGTGCTCAGAGCCACCACTATGATAACAAACACCAACAGCAACAAATGGACGGTTATAACAAGATAGCAACAACTGAAAAAGCAACAAAAAACGGTTTTGAAAGTTATGAGTGCAAAACTTGTAACCGTTTTTTTCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGAAAAACAATCTTCACCTTCGCAACCGCGACAAATCGCTACCACAACCGGTGAATTTGAAGAAGAAAACAACAAAATTCACACCAAGAATATTACTACTATCAATCCTCTTGTTCCTCCAGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGAATTCACCTCAGGTCAAGCATTGGGTGGTCACATGAGGAGACATAGAGCTTCTATTGATAAAAGTAACAACAAAAACAACAACGTTGTAGCTTTTGAAGGTGTTCATGTTAAGTCTAGAAATATTCTAGAATTGGATCTTAATTTTCCGGCACCGGAGGAAGATATCTCGGATTCGACGTTTCAGTTTCCGGCGATGGTGGGGTGCCATTATTAG 915 0.412 MLSKMDMEGILSTKEHGNDASHLIKGKRTKRLRQLSPCTVATTTVTSSCSSATGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGEGGGEEENQYRRAQSHHYDNKHQQQQMDGYNKIATTEKATKNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSSPSQPRQIATTTGEFEEENNKIHTKNITTINPLVPPVSLELRCGVNINFKPNKLNKIHECSICGAEFTSGQALGGHMRRHRASIDKSNNKNNNVVAFEGVHVKSRNILELDLNFPAPEEDISDSTFQFPAMVGCHY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3709 304 Pfam C2H2-type zinc finger 135 160 - -
Tpr7g3709 304 Pfam C2H2-type zinc finger 226 250 - -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 169 183 - -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 88 114 - -
Tpr7g3709 304 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Tpr7g3709 304 SMART c2h2final6 135 157 IPR013087 -
Tpr7g3709 304 SMART c2h2final6 226 248 IPR013087 -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 92 111 - -
Tpr7g3709 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Tpr7g3709 304 Gene3D Classic Zinc Finger 132 248 - -
Tpr7g3709 304 PANTHER ZINC FINGER PROTEIN ZAT5 1 299 - -
Tpr7g3709 304 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 299 - -
Tpr7g3709 304 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Tpr7g3709 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 1 26 - -
Tpr7g3709 304 SUPERFAMILY beta-beta-alpha zinc fingers 134 248 IPR036236 -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 9 25 - -
Tpr7g3709 304 MobiDBLite consensus disorder prediction 151 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3709 Tpr-Chr7 45901207 45902411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3709 10 304 C2H2 Transcription Factor Family AT2G28200 36.474 1.30e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g3709 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3709 - - gmx:100794834 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3709 7 45901207 45902411 Tpr4g1628 4 16637003 16638259 PCT