Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3706 ATGGATGAGCACCAAAACTCACTAGTGTACACCAATAATTTTGAACTTCATGACTTCATTGATGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGAATGAAGATGAAATATGTAACTTTGGTTCTGACCTTATCAATGATTGTTTCGTTGATAATAATCATCATCAGCTTCTTCCAATTCCTCCAAATCCATTAATATTTGATCACAACAGCAACAACAATAGCAATATTGTGAATGTGTTTGATCCAAGCTCTAGCACAATTGGCTCCTTCTCTAGTTATTCTAGGGAGGTTAAGGGAGAAGCAGAAAATGATGGAGATGATTCTTCGGCACCAACAATCACGACGACTGGAATTAATGATGGCAAACCTAGTGGTAAAACCGATAGGTCTAAGACACTCATTTCCGAAAGGAGAAGGAGAGGTCGGATGAAGGATAAGCTTTATGCGTTGCGCTCTTTGGTTCCCAATATTACAAAAATGGATAAGGCCTCTATAATTGGGGATGCAGTATCATATGTGCATGACCTTCAAACACAATCTAGGAAGTTAAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATGAAGGATCAATTAACAACACCATTAATGCTCAAAGCCATCCCATTTGCAAGAAAATTATCCAGGTGGACATGTTCCAAGTAGAGGAAAGAGGATATTATGCAAAAATATTGTGCAATAGAGGAGAAGGAGTAGCTCCTTCATTGTACAAGGCTATTGAATCTCTTGCAAATTTCAATATTCAAAATTCAAACTTGGCTACAGTTTGTGACAATTTTCTACTTACATTTACATTGAATGTAAATGGTTGTGAACAAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGTTGGTGCACTTTTGAACCAAGGCTTTGAATTCATGCCATCCTTTTGA 948 0.3703 MDEHQNSLVYTNNFELHDFIDDPNFDQFIDLIRGENEDEICNFGSDLINDCFVDNNHHQLLPIPPNPLIFDHNSNNNSNIVNVFDPSSSTIGSFSSYSREVKGEAENDGDDSSAPTITTTGINDGKPSGKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQTQSRKLKAEVAGLEASLLVSENYEGSINNTINAQSHPICKKIIQVDMFQVEERGYYAKILCNRGEGVAPSLYKAIESLANFNIQNSNLATVCDNFLLTFTLNVNGCEQEMNLQNLKLWVVGALLNQGFEFMPSF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3706 315 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Tpr7g3706 315 Gene3D - 126 197 IPR036638 GO:0046983
Tpr7g3706 315 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 312 - -
Tpr7g3706 315 MobiDBLite consensus disorder prediction 128 142 - -
Tpr7g3706 315 MobiDBLite consensus disorder prediction 99 142 - -
Tpr7g3706 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Tpr7g3706 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 312 - -
Tpr7g3706 315 Coils Coil 177 197 - -
Tpr7g3706 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 196 IPR036638 GO:0046983
Tpr7g3706 315 MobiDBLite consensus disorder prediction 111 127 - -
Tpr7g3706 315 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3706 Tpr-Chr7 45858966 45861173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3706 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.000 3.10e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g3706 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3706 - - gmx:100805451 435.261